Pinned Repositories
napari-intro-tutorial-scipy2022
Materials for the "Interactive image analysis with napari " workshop presented at SciPy 2022
napari-properties-viewer
A viewer for napari layer properties
napari-spot-detection-tutorial
A tutorial on performing spot detection using napari, scikit-image, and scipy
napari-spot-detector
A simple napari plugin for spot detection
ome-ngff-tables-prototype
prototype python implementation of the ome-ngff table spec
splineslicer
A python library for slicing nD images along splines.
napari-threedee
A 3D interactivity toolbox for napari
napari
napari: a fast, interactive, multi-dimensional image viewer for python
spatialdata
An open and interoperable data framework for spatial omics data
starfish
starfish: unified pipelines for image-based transcriptomics
kevinyamauchi's Repositories
kevinyamauchi/ome-ngff-tables-prototype
prototype python implementation of the ome-ngff table spec
kevinyamauchi/open-image-data
A handbook in producing and using open image data and pipelines.
kevinyamauchi/morphometrics
kevinyamauchi/morphospaces
A library for creating and exploring morphospaces
kevinyamauchi/PointAnnotator
Demo of a napari-based annotation app
kevinyamauchi/kevinyamauchi.github.io
Personal website based on the awesome academicpages template (https://academicpages.github.io).
kevinyamauchi/bia-bob
kevinyamauchi/cellcanvas
A tool to support interactive machine learning for cryoET data
kevinyamauchi/cellier
A multiscale cellular architecture visualization toolkit.
kevinyamauchi/cryo-et-sample-data
kevinyamauchi/docs
Documentation for napari (other than API docs)
kevinyamauchi/LaPreprint
📝 A nicely formatted LaTeX preprint template
kevinyamauchi/membrain-seg
membrane segmentation in 3D for cryo-ET
kevinyamauchi/microvis
kevinyamauchi/morphosamplers
A library for sampling image data along morphological objects such as splines and surfaces.
kevinyamauchi/morphosurfaces
Data models and utilities for meshed surfaces.
kevinyamauchi/napari
napari: a PyQt5- and VisPy-based ndarray visualization tool
kevinyamauchi/napari-animation
A napari plugin for making animations
kevinyamauchi/napari-spatialdata
Interactive visualization of spatial omics data
kevinyamauchi/napari-threedee
A suite of 3D interactivity tools for napari
kevinyamauchi/neubias-napari-workshop
kevinyamauchi/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
kevinyamauchi/pygfx
A python render engine running on wgpu.
kevinyamauchi/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
kevinyamauchi/sbb-transit-map
kevinyamauchi/spatialdata
Spatial Data
kevinyamauchi/spatialdata-io
kevinyamauchi/spatialdata-notebooks
kevinyamauchi/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
kevinyamauchi/surforama
a tool for using surfaces to explore volumetric data in napari