kexinhuang12345

kexinhuang12345's Stars

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.3k24823995

• lucidrains/alphafold2

  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

  Language:Python1.6k6449261

• giotto-ai/giotto-tda

  A high-performance topological machine learning toolbox in Python

  Language:Python86913269175

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  8582824333

• gnina/gnina

  A deep learning framework for molecular docking

  Language:C++64631221149

• torchmd/torchmd

  End-To-End Molecular Dynamics (MD) Engine using PyTorch

  Language:Python577162876

• KaihuaTang/Long-Tailed-Recognition.pytorch

  [NeurIPS 2020] This project provides a strong single-stage baseline for Long-Tailed Classification, Detection, and Instance Segmentation (LVIS). It is also a PyTorch implementation of the NeurIPS 2020 paper 'Long-Tailed Classification by Keeping the Good and Removing the Bad Momentum Causal Effect'.

  Language:Jupyter Notebook561123970

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  505343110

• RosettaCommons/PyRosetta.notebooks

  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

  Language:Jupyter Notebook50433034153

• wjmaddox/swa_gaussian

  Code repo for "A Simple Baseline for Bayesian Uncertainty in Deep Learning"

  Language:Jupyter Notebook453132182

• bruel-gabrielsson/TopologyLayer

  A Topology Layer for Machine Learning : Persistent Homology + Features for PyTorch

  Language:Python379123077

• Nealelab/UK_Biobank_GWAS

  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

  Language:Python3524042107

• openproblems-bio/openproblems

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Shell322718681

• cggh/scikit-allel

  A Python package for exploring and analysing genetic variation data

  Language:Jupyter Notebook2892526351

• yangji9181/HNE

  Heterogeneous Network Embedding: Survey, Benchmark, Evaluation, and Beyond

  Language:Python25762349

• monarch-initiative/mondo

  Mondo Disease Ontology

  Language:Jupyter Notebook237113.7k55

• PatWalters/resources

  A Highly Opinionated List of Open Source Cheminformatics Resources

  18820025

• Autodesk/molecular-design-toolkit

  Notebook-integrated tools for molecular simulation and visualization

  Language:Python1653211337

• samsinai/FLEXS

  Fitness landscape exploration sandbox for biological sequence design.

  Language:Jupyter Notebook1589721

• guyujun/pyrosetta-basic

  Language:Jupyter Notebook1526739

• PatWalters/rd_filters

  A script to run structural alerts using the RDKit and ChEMBL

  Language:Python132141437

• kb1dds/pysheaf

  Python Cellular Sheaf Library

  Language:Jupyter Notebook13019931

• Shen-Lab/SS-GCNs

  [ICML 2020] "When Does Self-Supervision Help Graph Convolutional Networks?" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen

  Language:Python1115227

• coleygroup/pyscreener

  pythonic interface to virtual screening software

  Language:Python8672332

• jensengroup/GB_GA

  Graph-based genetic algorithm

  Language:Python858031

• fraenkel-lab/OmicsIntegrator2

  Prize-Collecting Steiner Forests for Interactomes

  Language:Jupyter Notebook57106921

• songlab-cal/factored-attention

  This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

  Language:Jupyter Notebook567369

• crisbodnar/dgm

  Deep Graph Mapper: Seeing Graphs through the Neural Lens

  Language:Python54515

• MinkaiXu/CGCF-ConfGen

  :test_tube: Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)

  Language:Python454416

• adri-romsor/DietNetworks

  Language:Python3410213