Issues
- 5
Trinucleotide context names for plot_spectrum
#68 opened by fanghu-hku - 1
- 1
divergent transitions after warmup
#67 opened by ab08028 - 3
- 5
Signature fitting for non-human data
#66 opened by kw10 - 4
Similar signatures - inconsistent extraction
#65 opened by gevro - 3
get_loglik
#59 opened by ab08028 - 1
Parallelization of fit_signatures
#60 opened by jasonptm - 1
install sigfit: Pandoc is required to build R Markdown vignettes but not available.
#61 opened by jingydz - 2
- 3
Preparing mutational opportunities matrix?
#56 opened by kmegq - 2
Bug in build_catalogues
#63 opened by gevro - 1
sigfit.rdb' is corrupt
#62 opened by gevro - 2
Fitting Samples Across Multiple Genomes
#58 opened by jasonptm - 8
Installation error
#57 opened by gevro - 3
Error running second vignette
#54 opened by kmegq - 4
Data set 'cosmic_signatures_v3' not found
#53 opened by kmegq - 6
- 2
Add functionality to get variant triplet context from a list of variant positions and the ref sequence
#22 opened by kgori - 7
Can't find vignette
#50 opened by Dagsbio - 0
Enhancements for v2.0
#45 opened by baezortega - 1
get reconstructed mutation catalogues
#48 opened by MariaCartolano - 1
Refitting after signature selection
#44 opened by arpoe - 3
Installation problem in MacOS
#46 opened by mishugeb - 3
Implement optional multi-chain extraction
#23 opened by baezortega - 1
Remove integer counts restriction
#33 opened by baezortega - 0
Enhancements for v1.3.0
#35 opened by baezortega - 2
Install problem in window sysmtem
#43 opened by Shicheng-Guo - 1
- 2
`multiplier` prior in EMu model
#39 opened by baezortega - 1
C++11 required for latest StanHeaders (2.18)
#36 opened by kgori - 1
Format mutation counts in plots
#34 opened by baezortega - 2
- 1
Fixes and improvements for v1.2.0
#30 opened by baezortega - 4
- 8
Out of date code in vignette
#26 opened by dg13 - 1
Other out of date code in vignette
#27 opened by dg13 - 1
Attach input data to output stanfit
#25 opened by baezortega - 0
Multi-level model for different tissue types
#24 opened by kgori - 4
Keep an eye on Stan error
#19 opened by baezortega - 0
Test new features
#15 opened by baezortega - 0
Implement user-defined signature priors
#12 opened by baezortega - 2
Exposures are mislabelled in plot_reconstruction
#21 opened by kgori - 0
Improve function documentation
#13 opened by baezortega - 3
- 2
Revise log_lik in emu models
#17 opened by baezortega - 1
Fix signatures matrix declaration(s)
#18 opened by baezortega - 0
Implement log likelihood in all models
#14 opened by baezortega - 2
- 1
Rename Stan models for coherence
#11 opened by baezortega