khayer
Bioinformatics Scientist and Drexel PhD student
Children's Hospital of PhiladelphiaPhiladelphia, PA
Pinned Repositories
aligner_benchmark
benchmark_quantifiers
benchmarking_scripts
Repository to benchmark algorithms for determining expressed full length mRNA splice forms from RNA-seq data.
blat_parser
circadb
Database of circadian rhythms
differential_expression_scripts
Learning-Ruby
mutations_caller_pipeline
Developt for Zebrafish
mutations_caller_pipeline_aws
Pipeline to run BWA + GATK on a Illumina sample.
rna_seq_standard_pipeline
Snakemake workflow to analyze bulk RNA-seq
khayer's Repositories
khayer/circadb
Database of circadian rhythms
khayer/rna_seq_standard_pipeline
Snakemake workflow to analyze bulk RNA-seq
khayer/aligner_benchmark
khayer/mutations_caller_pipeline_aws
Pipeline to run BWA + GATK on a Illumina sample.
khayer/mutations_caller_pipeline
Developt for Zebrafish
khayer/nugen_barcode_splitter
Nugen Barcode Splitter for Illumina - This gem is designed to demultiplex reads produced by Illumina with nugen barcodes. It is using FASTX-toolkit for the barcode splitting.
khayer/ruby_on_rails_test
khayer/ruby_rum
khayer/scripts
These files are a random collection of scripts used for different situations. This is just a way to back them up.
khayer/Tracking
OpenCV and Python test
khayer/zebrafish_pipeline
UNDER CONSTRUCTION
khayer/benchmark_quantifiers
khayer/benchmarking_scripts
Repository to benchmark algorithms for determining expressed full length mRNA splice forms from RNA-seq data.
khayer/differential_expression_scripts
khayer/Azurify
Ashkan code for testing
khayer/BHTC
khayer/bp3_scripts
khayer/chocomilk
Computer vision for mice behavioral experiments
khayer/coding_exercises
khayer/CRISPRkat
CRISPRkat
khayer/features2table
khayer/hamster
khayer/hippotigris
A collection used for the SRA normalization scripts.
khayer/immunotar
Rawan code for testing
khayer/ISA-templates
XML files for ISAcreator
khayer/ITMAT_circularRNA
khayer/random_scripts
the name says it all
khayer/sam2cov
khayer/sample_niner
Ruby on Rails Tutorial sample application
khayer/Tracking2
4 box maze