Pinned Repositories
awesome-emacs
A community driven list of useful Emacs packages, libraries and others.
bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
bioservices
Access to Biological Web Services from Python.
damona
singularity environment manager (application to NGS and bioinformatics)
demultiplex
Sequana demultiplexing pipeline
denovo
Denovo Assembly from FASTQ files
depletion
Deplete Fastq files from human or other content
divtrans
divtrans_azebi_2019
pyNextGen
The evolution of pyGen with Python and R code for more advanced Bioinformatic and deep sequencing analysis
khourhin's Repositories
khourhin/awesome-emacs
A community driven list of useful Emacs packages, libraries and others.
khourhin/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
khourhin/bioservices
Access to Biological Web Services from Python.
khourhin/damona
singularity environment manager (application to NGS and bioinformatics)
khourhin/demultiplex
Sequana demultiplexing pipeline
khourhin/denovo
Denovo Assembly from FASTQ files
khourhin/depletion
Deplete Fastq files from human or other content
khourhin/divtrans
khourhin/isopy
khourhin/GNFish
Suite of Python programs for Gene extraction and Phylogentic Inference
khourhin/jupyterlite_test
khourhin/mapper
Pipeline to map a set of FastQ files
khourhin/mycotools
Library for Mycobacterium related bioinformatic tools
khourhin/nanomerge
Pipeline utility to perform merge of barcoded nanopore runs
khourhin/nbdev_test
khourhin/of_demultiplexing_and_fastqc
repository for JOSS paper about sequana_fastqc and sequana_demultiplex pipelines
khourhin/org-gcal.el
Org sync with Google Calendar. (active maintained project as of 2019-11-06)
khourhin/repnots
khourhin/rnaseq
RNA-seq, QC and differential analysis pipeline
khourhin/rnextgen
khourhin/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
khourhin/sequana
Sequana: a set of Snakemake NGS pipelines
khourhin/sequana-wrappers
The Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.
khourhin/sequana_pipetools
A set of tools to help building or using sequana pipelines
khourhin/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
khourhin/telofinder
khourhin/uber_container
khourhin/variant_calling
khourhin/versionix
khourhin/webapp_rnadiff