kilianFatras's Stars
facebookresearch/DiT
Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"
facebookresearch/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
aqlaboratory/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
RosettaCommons/RFdiffusion
Code for running RFdiffusion
chaidiscovery/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
generatebio/chroma
A generative model for programmable protein design
MishaLaskin/vqvae
A pytorch implementation of the vector quantized variational autoencoder (https://arxiv.org/abs/1711.00937)
Tsingularity/dift
[NeurIPS'23] Emergent Correspondence from Image Diffusion
torchmd/torchmd
End-To-End Molecular Dynamics (MD) Engine using PyTorch
naver/roma
RoMa: A lightweight library to deal with 3D rotations in PyTorch.
nadavbh12/VQ-VAE
Minimalist implementation of VQ-VAE in Pytorch
divelab/AIRS
Artificial Intelligence Research for Science (AIRS)
martenlienen/torchode
A parallel ODE solver for PyTorch
martinpacesa/BindCraft
User friendly and accurate binder design pipeline
facebookresearch/riemannian-fm
code for "Riemannian Flow Matching on General Geometries".
DreamFold/FoldFlow
FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
SamsungSAILMontreal/ForestDiffusion
Generating and Imputing Tabular Data via Diffusion and Flow XGBoost Models
forever208/DDPM-IP
[ICML 2023] official implementation for "Input Perturbation Reduces Exposure Bias in Diffusion Models"
amyxlu/cheap-proteins
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https://www.biorxiv.org/content/10.1101/2024.08.06.606920v1
Wangchentong/Proteus
Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
Bitbol-Lab/ProtMamba-ssm
ProtMamba: a homology-aware but alignment-free protein state space model
andrew-cr/discrete_flow_models
Code for the paper https://arxiv.org/abs/2402.04997
jzhoulab/ddsm
Dirichlet Diffusion Score Model for Biological Sequence Generation.
bytedance/dplm
programmablebio/ptm-mamba
aim-uofa/VFN
[ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".
yikun-baio/sliced_opt
Hiroki11x/LossLandscapeGeometry
No Wrong Turns: The Simple Geometry Of Neural Networks Optimization Paths (ICML2024)
radiradev/flowmatching-bdt
Implementation of flow matching on tabular data using XGBoost
kilianFatras/conditional-flow-matching
Conditional Flow Matching: Simulation-Free Dynamic Optimal Transport