Pinned Repositories
cryo_fit
cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules
cryo_fit2
cryo_fit2 source codes, test files, live at .../phenix-xxxx/modules
3D-VQ-VAE-2
3D VQ-VAE-2 for high-resolution CT scan synthesis
3D_Scaffold
3DShape2VecSet
4D-CHAINS
4D-CHAINS software for protein NMR assignment
a-cnn
adaptivediffgrid_ex
AutoMicroED
kimdn's Repositories
kimdn/a-cnn
kimdn/APT-point-cloud
Observe the APT point cloud in your browser.
kimdn/apt-tools
Python tools for importing, processing [and analysing] Atom Probe Tomography (APT) data.
kimdn/Atom-Probe-Tomgrophy
Crystallographic Indexing of Atom Probe Datasets Using Machine-Learning Algorithms
kimdn/BET
Bioassembly Evaluation Tool
kimdn/cyclic_peptide_protocol_capture
kimdn/data_sets
kimdn/database
kimdn/DeepAcet
A deep learning framework to predict the lysine acetylation sites in protein
kimdn/DeepHistone
kimdn/Display-of-preset-Rosetta-NCAAs
What exactly are the non-canonical amino acids in the Rosetta database folder?
kimdn/funscoR
R package for functionally scoring phosphorylation sites
kimdn/generative-inpainting-pytorch
A PyTorch reimplementation for paper Generative Image Inpainting with Contextual Attention (https://arxiv.org/abs/1801.07892)
kimdn/HDBSCAN_DeBaCl_APT_V1_Public
kimdn/in_house_codes_for_SAXS
To share codes developed by Kim et al.
kimdn/medium-acnn
kimdn/MMD-Variational-Autoencoder-Pytorch-InfoVAE
Implementation of the MMD VAE paper (InfoVAE: Information Maximizing Variational Autoencoders) in pytorch
kimdn/muzero
A clean implementation of MuZero and AlphaZero following the AlphaZero General framework. Train and Pit both algorithms against each other, and investigate reliability of learned MuZero MDP models.
kimdn/muzero-general
MuZero
kimdn/NormAE
Batch effects removal method based on deep autoencoder and adversarial learning
kimdn/pdb2fasta
implementing PDB to FASTA file format conversion in multiple languages
kimdn/PU-Net
PU-Net: Point Cloud Upsampling Network, CVPR, 2018 (https://arxiv.org/abs/1801.06761)
kimdn/pytorch-3d-point-cloud-generation
Pytorch code to construct a 3D point cloud model from single RGB image.
kimdn/pytorch-practice
Some example scripts on pytorch
kimdn/pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
kimdn/PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
kimdn/ResNetVAE
Variational AutoEncoder + ResNet Transfer Learning
kimdn/SSBONDPredict
A machine learning method for disulfide bond engineering site prediction based on structures
kimdn/StarTool
The Swiss Army Knife for Editing Relion .STAR Files
kimdn/vq-vae-2-pytorch
Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch