kipkurui
A Bioinformatics researcher and an open science enthusiast with a keen interest in genomics and machine learning.
@iaviNairobi
Pinned Repositories
2019-06-20-Nairobi
Software Carpentry Workshop in Nairobi website (certification exercise)
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Kibet-F1000Research
Supporting Documents and Data accompanying Kibet and Machanick (2015)
MachineLearning4Malaria
Analyse trends in machine learning adoption in Malaria Research.
MARS_Evaluation
Data and Notebooks describing the evaluation of MARSTools
MARSTools
A suite of tools for Motif Assessment and Ranking. Used in MARS webserver at
OpenScienceInBioinformatics-Kenya
Promoting Open Science in Bioinformatics - Kenya
Python4Bioinformatics
Lecture resources for Python for Bioinformatics EANBiT course.
Python4BioinformaticsV2
Updated materials for MSc Bioinformatics for Pwani University
XGB-TFBSContext
An Ensemble Approach to Elucidating Transcription Factor Binding Specificity and Occupancy
kipkurui's Repositories
kipkurui/OpenScienceInBioinformatics-Kenya
Promoting Open Science in Bioinformatics - Kenya
kipkurui/atom
:atom: The hackable text editor
kipkurui/awesome-dataviz
:chart_with_upwards_trend: A curated list of awesome data visualization libraries and resources.
kipkurui/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
kipkurui/bioinf-python
Python for Bioinformatics
kipkurui/bioinfo-review
kipkurui/ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
kipkurui/DAT8
General Assembly's Data Science course in Washington, DC
kipkurui/DataMining
kipkurui/django-djangui
Automatically generate a django app from a set of argparse scripts
kipkurui/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
kipkurui/hack-paper
kipkurui/hpc_and_cloud_computing_pipelines
Introductions to high throughput/performance and cloud computing
kipkurui/Introduction-to-Linux
kipkurui/IntroductoryLinux
Introduction to Linux for the Eastern Africa Network of Bioinformatics Training (EANBiT) Training Course, 2018.
kipkurui/JMS
A workflow management system and web-based cluster front-end for the high performance computing
kipkurui/Machine_Learning_in_Life_Sciences
This repository includes the code that I used for my opinion paper: 'The Rise and Fall of Machine Learning Methods in Biomedical Research'
kipkurui/Multiple_Myeloma_DREAM
Store Code and Data from the multiple myeloma DREAM Challenge
kipkurui/October_2016
Planning repository for Genomics Hackathon in Vancouver
kipkurui/PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
kipkurui/react-europe-workshop
kipkurui/repoa
Fun learning repo
kipkurui/ReproducibleResearchRStudio
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
kipkurui/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
kipkurui/snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
kipkurui/snakemake-demo
kipkurui/startbootstrap-sb-admin
A free, open source, Bootstrap admin theme created by Start Bootstrap
kipkurui/studyGroup
A group to skill-share, co-work, and create community on
kipkurui/TeamKE_DreamChallenge
kipkurui/sd18spring.github.io
Software Design Fall 2018 web site source