Pinned Repositories
CADD-browserTracks
UCSC genome browser tracks for CADD
CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
CADD-SV
CADD-SV – a framework to score the effect of structural variants
cfDNA
cfDNA analysis workflow
cfDNA-UniFlow
Workflow for preprocessing cfDNA samples.
cfDNA_GCcorrection
hemoMIPs
Automated analysis and result reporting for targeted sequencing data
kircherlab.github.io
Kircher Lab website
MPRA_SaturationMutagenesis
R Shiny website of the Saturation Mutagenesis manuscript
MPRAsnakeflow
new implementation of MPRAsnakeflow fork of MPRAflow
kircherlab's Repositories
kircherlab/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
kircherlab/cfDNA
cfDNA analysis workflow
kircherlab/CADD-SV
CADD-SV – a framework to score the effect of structural variants
kircherlab/hemoMIPs
Automated analysis and result reporting for targeted sequencing data
kircherlab/cfDNA_GCcorrection
kircherlab/MPRAsnakeflow
new implementation of MPRAsnakeflow fork of MPRAflow
kircherlab/MPRA_SaturationMutagenesis
R Shiny website of the Saturation Mutagenesis manuscript
kircherlab/CADD-browserTracks
UCSC genome browser tracks for CADD
kircherlab/kircherlab.github.io
Kircher Lab website
kircherlab/cfDNA-UniFlow
Workflow for preprocessing cfDNA samples.
kircherlab/cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows
kircherlab/cookiecutter-snakemake-wrappers
Cookiecutter template for snakemake wrappers.
kircherlab/MPRAsnakeflow_tutorial
kircherlab/negative_training_sampler
kircherlab/ReMM
ReMM score snakemake workflow
kircherlab/snakemake_wrappers
snakemake wrappers to share with others and to us ethem in multiple projects
kircherlab/bc_mpralm
Adaptation of mpralm that allows for modeling individual barcodes
kircherlab/HowToTrainDNN
Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany
kircherlab/MPRAOligoDesign
Basic scripts for creating an oligo design file
kircherlab/TF_enrichment_workflow
Workflow to calculate enrichment of transcriptionfactors in open chromatin regions