klebgenomics/Kaptive

Issues

• Tabs in FASTA record headers cause Kaptive to fall over

  #39 opened 5 months ago by CorinYeatsCGPS
  2

• Spaces in assembly path breaks minimap2 subprocess

  #37 opened 5 months ago by tomdstanton
  1

• Klebsiella oxytoca and Klebsiella aerogenes

  #38 opened 6 months ago by abrozzi
  2

• Graphical issues with the web server

  #16 opened a year ago by claire-elek
  3

• Issues uploading multiple jobs on web server

  #21 opened a year ago by danielmora0
  1

• Creating Locus References Database

  #25 opened a year ago by ne1al
  3

• Classification with reads instead of assembled genomes?

  #26 opened a year ago by stitam
  3

• something wrong with the json file (--json)

  #31 opened a year ago by fengyuchengdu
  3

• GenBank output not found.

  #14 opened 4 years ago by Taalouane
  2

• BiopythonWarning: Partial codon, len(sequence) not a multiple of three

  #17 opened a year ago by abrozzi
  1

• find_program :: use command -v instead of which

  #11 opened a year ago by EricDeveaud
  1

• Make pip installable

  #4 opened a year ago by tseemann
  3

• KeyError: 'OL101'

  #29 opened a year ago by fengyuchengdu
  1

• New feature suggestion for improving prediction speed

  #24 opened 2 years ago by stitam
  1

• Blast error in v2.0.2

  #22 opened 3 years ago by stitam
  2

• kaptive.py --version prints v2.0.0

  #23 opened 3 years ago by stitam
  1

• Please checkout patches applied to the Debian packaged version

  #20 opened 3 years ago by tillea
  2

• The program's automatically determined is invalid

  #18 opened 3 years ago by zxgsy520
  2

• plasmids in Klebsiella

  #19 opened 3 years ago by abrozzi
  2

• Allele typing seems not working (=NotFound)

  #15 opened 4 years ago by abrozzi
  2

• Kaptive failed to run

  #13 opened 4 years ago by mingjuhao
  3

• About the k or o-locus database

  #5 opened 4 years ago by huizhen2014
  4

• Double quotes in Abaum OC database

  #9 opened 5 years ago by LeahRoberts
  1

• Error: tblastn crashed

  #7 opened 5 years ago by mingjuhao
  3

• how to use the reference database without inputing path before it?

  #8 opened 5 years ago by mingjuhao
  1

• version flag

  #3 opened 8 years ago by Takadonet
  1

• ETA for new release?

  #2 opened 8 years ago by Takadonet
  1

• Trying to understand Kaptive results - matching a locus but all genes missing alternative genes found

  #1 opened 8 years ago by swlong
  7