tomdstanton

Microbial bioinformatics postdoc; mol bio background. - Monash/LSHTM/UoE/UKHSA - Triathlete/music production

Monash UniversityMelbourne

Pinned Repositories

Kaptive
Language:Python44 10 2821
Kaptive-Web
Kaptive web interface
Language:Python8 5 43
bart
bacterial read typer :dna: :skateboard: :microbe:
Language:Python5 2 02
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
GetAlleles
Extract alleles from genome assemblies
Language:Python2 1 32
Kleborate
Language:Python00
posii
position interrogator :dna::female_detective::abacus:
Language:Python1 2 00
sideroscanner
SideroScanner: a tool for annotating IROMPs in bacteria
Language:Python8 3 02

tomdstanton's Repositories

tomdstanton/sideroscanner
SideroScanner: a tool for annotating IROMPs in bacteria
Language:Python8 3 02
tomdstanton/bart
bacterial read typer :dna: :skateboard: :microbe:
Language:Python5 2 02
tomdstanton/GetAlleles
Extract alleles from genome assemblies
Language:Python2 1 32
tomdstanton/posii
position interrogator :dna::female_detective::abacus:
Language:Python1 2 00
tomdstanton/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
tomdstanton/Kleborate
Language:Python00
tomdstanton/KleborateModular
A modular rewrite of Kleborate
Language:Python00
tomdstanton/od_calc
Quick dilution calculation for bacterial OD
Language:Python0 2 00
tomdstanton/RScripts
A collection of R Scripts
Language:R0 1 00
tomdstanton/Verticall
Recombination-free trees
Language:Python0 1 00
tomdstanton/vibrio_parahaemolyticus_genomoserotyping
Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus
0 0