tomdstanton

Microbinfie with a focus on genes and phenotypes; mol bio background. - Monash/LSHTM/UoE/UKHSA - Wyres/Holt/Schneiders labs. - Triathlete/DJ.

Monash UniversityMelbourne

Pinned Repositories

Kaptive
Language:Python37 9 2520
bart
bacterial read typer :dna: :skateboard: :microbe:
Language:Python5 2 02
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
biopigz
Fast and very sm0l bacterial genome (un)gzipper
Language:Python0 2 00
GetAlleles
Extract alleles for a target gene from assemblies
Language:Python12
posii
position interrogator :dna::female_detective::abacus:
Language:Python1 2 00
sideroscanner
SideroScanner: a tool for annotating IROMPs in bacteria
Language:Python8 3 02
stantlib
Tom's toolbox for microbial sequence analysis
Language:Python11 1 00

tomdstanton's Repositories

tomdstanton/stantlib
Tom's toolbox for microbial sequence analysis
Language:Python11 1 00
tomdstanton/sideroscanner
SideroScanner: a tool for annotating IROMPs in bacteria
Language:Python8 3 02
tomdstanton/bart
bacterial read typer :dna: :skateboard: :microbe:
Language:Python5 2 02
tomdstanton/GetAlleles
Extract alleles for a target gene from assemblies
Language:Python12
tomdstanton/posii
position interrogator :dna::female_detective::abacus:
Language:Python1 2 00
tomdstanton/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
tomdstanton/biopigz
Fast and very sm0l bacterial genome (un)gzipper
Language:Python0 2 00
tomdstanton/od_calc
Quick dilution calculation for bacterial OD
Language:Python0 2 00
tomdstanton/Verticall
Recombination-free trees
Language:Python0 1 00
tomdstanton/vibrio_parahaemolyticus_genomoserotyping
Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus