kn-bibs/dotplot

Issues

• Increase tests coverage to at least 75%

  #42 opened 7 years ago by krassowski
  0

• [proposition] Rewrite "readme" to rst

  #53 opened 7 years ago by krassowski
  1

• Add options panel where a user can set parameters for plotter like "window size" or "stringency"

  #45 opened 8 years ago by krassowski
  1

• Sequence label in matplotilb does not work well with window_size option

  #52 opened 8 years ago by krassowski
  0

• Let user decide if sequence should be displayed

  #49 opened 8 years ago by krassowski
  1

• Use block elements from UTF-8 charset to display different shades of dotplot

  #44 opened 8 years ago by krassowski
  1

• Add "stringency" parameter to CLI (argument_parser.py)

  #46 opened 8 years ago by krassowski
  0

• Add different substitution matrices for plotter

  #40 opened 8 years ago by krassowski
  1

• Add axes labels

  #35 opened 8 years ago by kinga322
  1

• Implement "window-size" for plotter

  #39 opened 8 years ago by krassowski
  1

• Dotplot should be able to generate a heatmap

  #20 opened 8 years ago by magickris93
  1

• Eliminate repetitive fragments of code in 'plotter.py'

  #26 opened 8 years ago by krassowski
  1

• Show messages in status bar after file selection and plotting

  #27 opened 8 years ago by krassowski
  1

• Add basic description to built-in help

  #25 opened 8 years ago by krassowski
  0

• Add help/tutorial window to GUI

  #32 opened 8 years ago by krassowski
  0

• Save plot to file

  #34 opened 8 years ago by kinga322
  0

• Fetch sequence by gene

  #38 opened 8 years ago by krassowski
  0

• "Undo" option

  #37 opened 8 years ago by krassowski
  0

• We should generate graphics

  #18 opened 8 years ago by maciosz
  0

• Add exemplar sequence identifiers to chooser

  #31 opened 8 years ago by krassowski
  0

• Loading non-FASTA plain text files

  #22 opened 8 years ago by pknut
  0

• We need to have a licence

  #17 opened 8 years ago by krassowski
  0

• Our program should interpret without us!

  #19 opened 8 years ago by Alria
  0

• Clean dotplot.py and gui.py to raise its score in pylint to at least 7.5

  #30 opened 8 years ago by maciosz
  6

• Graphical and command-line interface for sequence retrieval

  #29 opened 8 years ago by krassowski
  1

• Add appropriate shebang to main file

  #24 opened 8 years ago by krassowski
  0

• We need to be able to download sequences from various databases

  #23 opened 8 years ago by kkuczkowska
  2

• Reading multiple sequences from one fasta file

  #21 opened 8 years ago by kinga322
  0

• Let's use unicode characters for drawing

  #12 opened 8 years ago by krassowski
  1