komalsrathi
Bioinformatics Scientist III | D3b center | Children's Hospital of Philadelphia
Children's Hospital of PhiladelphiaPhiladelphia, PA
Pinned Repositories
medullo-classifier-dev
Repo to train the classifier and test it on 15 datasets
medullo-classifier-package
R package for Medulloblastoma subtype classification
medullo-classifier-shinyapp
Shiny app for medullo classifier R package
bash-profile
My bash profile
Genomic_Analysis
Interconvert between various common genomic data file formats
HiC
HiC analysis to infer inter- and intra-chromosomal interactions
rnaseq-star-rsem-pipeline
STAR-RSEM pipeline for RNA-seq data processing
rshiny_tutorial
Basic R shiny tutorial for beginners
shiny-server
Documentation on creating a shiny server
TCGA
komalsrathi's Repositories
komalsrathi/rnaseq-star-rsem-pipeline
STAR-RSEM pipeline for RNA-seq data processing
komalsrathi/bash-profile
My bash profile
komalsrathi/rnaseq-batch-correction
Module for RNA-seq batch correction
komalsrathi/rshiny_tutorial
Basic R shiny tutorial for beginners
komalsrathi/topGO_shiny_dashboard
R Shiny: Web Interface for topGO and SPIA R Packages.
komalsrathi/MendelianRNA-seq
Code for MendelianRNA-seq processing
komalsrathi/miRNAEnrich
miRNA Enrichment in microarray dataset
komalsrathi/tourette-analysis
Analysis of Tourette data (Wallace lab)
komalsrathi/shiny-server
Documentation on creating a shiny server
komalsrathi/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
komalsrathi/env
Leukgen environment variables.
komalsrathi/exceRpt
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
komalsrathi/fusions
komalsrathi/GecKO_Riger_Analysis
komalsrathi/GIST
R Shiny: Genelists Intersection Tool (GIST)
komalsrathi/git-guide
guide/solutions to general problems around git
komalsrathi/gmkf-data-tracker
R shiny: Data tracker for GMKF projects
komalsrathi/inSilico-wgs-bamfile
make small test bam files (~2.0GB) to simulate WGS data
komalsrathi/jasdumas.github.io
A brief web page about me
komalsrathi/komalsrathi
komalsrathi/leukapp
Intranet website for Leukemia Genomics sample and project management.
komalsrathi/leukcgp
komalsrathi/marislab-webportal
Portal for John Maris's Lab
komalsrathi/MendelianRNA-seq-analysis
All post processing analysis related to CdLS mendelian analysis project
komalsrathi/MSK_LeukGen
Contains scripts written for Leukemia Genomics Center at MSK
komalsrathi/OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
komalsrathi/OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
komalsrathi/rafalib
komalsrathi/skeletal-muscle-rnaseq
Skeletal Muscle RNA-seq analysis in Mice
komalsrathi/toil-rnaseq-20k
Repo for qc, data processing, and downstream analysis for diseaseXpress data