komalsrathi
Bioinformatics Scientist III | D3b center | Children's Hospital of Philadelphia
Children's Hospital of PhiladelphiaPhiladelphia, PA
Pinned Repositories
medullo-classifier-dev
Repo to train the classifier and test it on 15 datasets
medullo-classifier-package
R package for Medulloblastoma subtype classification
medullo-classifier-shinyapp
Shiny app for medullo classifier R package
bash-profile
My bash profile
Genomic_Analysis
Interconvert between various common genomic data file formats
HiC
HiC analysis to infer inter- and intra-chromosomal interactions
rnaseq-star-rsem-pipeline
STAR-RSEM pipeline for RNA-seq data processing
rshiny_tutorial
Basic R shiny tutorial for beginners
shiny-server
Documentation on creating a shiny server
TCGA
komalsrathi's Repositories
komalsrathi/TCGA
komalsrathi/HiC
HiC analysis to infer inter- and intra-chromosomal interactions
komalsrathi/Genomic_Analysis
Interconvert between various common genomic data file formats
komalsrathi/RNAseq_Misc_Analysis
Misc. scripts for RNASeq Analysis in R, Perl, Python and Bash
komalsrathi/GSNAP_Batch
Run GSNAP in parallel mode
komalsrathi/GTEx
Prepare GTEx data
komalsrathi/Microarray_Analysis
Analysis of Microarray data
komalsrathi/Allelic_Motif_Analysis
Infer if a SNP regulates or affects binding of a TF by altering its motif
komalsrathi/ASE_bamreadcount
Allele Specific Expression using bam-readcount
komalsrathi/cgpBattenberg
Battenberg algorithm and associated implementation script
komalsrathi/encodeRNAseqEvaluation
komalsrathi/Linux-Hacks
General linux based hacks
komalsrathi/Motif_Conservation_PhastCons
Measuring short motif conservation using PhastCons scores
komalsrathi/Motif_Search_MEME
Motif Search using Meme Suite
komalsrathi/PhasedGenotypes_ASE_asSeq
Allele Specific Expression on Phased Genotype Data using asSeq R Package
komalsrathi/R_hacks
Simple commands to make coding in R easier!
komalsrathi/tiny-test-data
Super small biological datasets for unit testing