konrad

Bioinformatician/Computational Biologist, Open [Source|Data|Access|Science|*] enthusiast, Coder, CLI ninja, ORCID: 0000-0002-1481-2996

ZB MED - Information Centre for Life Science & TH KölnGermany

Pinned Repositories

COVERnant
COVERnant - A tool to generate and manipulate coverage plots of high-throughput sequencing data.
Language:Python1 5 173
READemption
A pipeline for the computational evaluation of RNA-Seq data
Language:Python37 9 5419
SSH_tutorial
SSH tutorial
Language:Makefile1 2 07
2022-Course_Data_Visualization_Master_Digital_Sciences
Language:Jupyter Notebook3 4 00
Collaborative-platforms-for-streamlining-workflows-in-Open-Science
A manuscript for a OKCon 2011 publication
3 4 01
Introduction_to_the_Unix_Shell_for_biologists
Introduction to the Unix Shell for biologists
Language:Makefile20 7 013
JATS-to-Mediawiki
A PubMed Central to MediaWiki converter
Language:XSLT11 7 185
Open_Science_Workshop_Toolbox
A collection of resources and ideas for running workshops/seminar about Open Science
9 7 01

konrad's Repositories

konrad/2019-09-10-ttt-online-BST
Carpentry instructor training workshop
Language:HTML1 4 0
konrad/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Language:Python1 1 02
konrad/2019-11-26-Data_Librarian_2019_2020
ZBIW Zertifikatskurs "Data Librarian"
Language:Jupyter Notebook012
konrad/2019-04-02-Library_Carpentry_TH_Koeln_ZBIW
Library Carpentry 2019-04-02/2019-04-03 @ TH Köln - ZBIW
Language:Python2 0
konrad/2019-05-15-Library_Carpentry_TH_Koeln_ZBIW
Language:Python3 0
konrad/2019-07-11-Supervised_Machine_Learning_as_part_of_an_EBI_Systems_Biology_course
Session "Supervised Machine Learning" as part of the EBI cours "Systems Biology - From large data sets to biological insight" 2019
Language:Jupyter Notebook2 01
konrad/2019-08-28-ttt-online-CEST
Carpentry instructor training workshop
Language:HTML4 0
konrad/2019-09-25-Library_Carpentry_TH_Koeln_ZBIW
Language:Python1 0
konrad/2020-03-28-COVID-19_preprints_to_Wikidata_pilot
Language:Python
konrad/2020-09-10-LC_ZBIW_online
Language:HTML2 0
konrad/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
Language:Python2 0
konrad/awesome-python-data-science
Probably the best curated list of data science software in Python.
2 0
konrad/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
konrad/Awesome-UNIX
All the UNIX and UNIX-Like: Linux, BSD, macOS, Illumos, 9front, and more.
konrad/BDK-Library_Carpentry_Aufgabenset_1_GRAW
Repository for library carpentry project course at TH Cologne
Language:Jupyter Notebook2 0
konrad/Bdk-Library_Carpentry_Aufgabenset_1_Rabea_Mueller
Language:Jupyter Notebook2 0
konrad/Bdk-Library_Carpentry_Aufgabenset_1_Rene_Bennemann
Language:Jupyter Notebook1 0
konrad/codimd
CodiMD - Realtime collaborative markdown notes on all platforms.
konrad/emacs-lisp
Exercism exercises in Emacs Lisp.
Language:Emacs Lisp2 0
konrad/executive-council-info
Information from the Executive Council
2 0
konrad/gitlab-introspection
A groovy toolbox for inspecting gitlab servers via their API.
Language:Groovy2 0
konrad/instructor-training
The Carpentries (Software, Data, and Library Carpentry) instructor training course material
Language:HTML2 0
konrad/Jupyter_notebook_test
konrad/neurodegenerative_diseases_platform
3 0
konrad/nixpkgs
Nix Packages collection
Language:Nix
konrad/openml-python
Python module to interface with OpenML
Language:Python1 0
konrad/python-lesson-Rabea
Language:Jupyter Notebook2 01
konrad/python_lessons_Konrad
Language:Jupyter Notebook3 0
konrad/READemption
This repo move to a new location!
konrad/wikibase-cli
read and edit a Wikibase instance from the command line
Language:JavaScript2 0