kouichi-c-nakamura
Kouichi is a postdoctoral neuroscientist working at MRC Brain Network Dynamics Unit, University of Oxford, UK.
MRC Brain Network Dynamics Unit/University of OxfordUK
Pinned Repositories
copytoImagePlus
Assuming you have communication between ImageJ and MATLAB via ImageJ-MATLAB, copytoImagePlus allows you to turn a MATLAB array into ImagePlus object.
DABEST-Matlab
MATLAB package to generate contrast plots
ijmshow
a wrapper of net.imagej.matlab.ImageJMATLABCommands.show() to support opening a MATLAB array as 5D hyperstack in ImageJ
language-spike2
Spike2 language support for Atom.
phase-averaged-waveform
MATLAB code for the phase-analysis of continuous data, including EEG and background unit activity (BUA)
Zotero-translator-SfN-2016
Society for Neuroscience Abstract 2016.js is a web translator for the bibliographic software, Zotero. This will allow you to store abstracts into your Zotero library. This translator works for Society for Neuroscience Abstracts from 2016 onwards.
kouichi-c-nakamura's Repositories
kouichi-c-nakamura/copytoImagePlus
Assuming you have communication between ImageJ and MATLAB via ImageJ-MATLAB, copytoImagePlus allows you to turn a MATLAB array into ImagePlus object.
kouichi-c-nakamura/ijmshow
a wrapper of net.imagej.matlab.ImageJMATLABCommands.show() to support opening a MATLAB array as 5D hyperstack in ImageJ
kouichi-c-nakamura/phase-averaged-waveform
MATLAB code for the phase-analysis of continuous data, including EEG and background unit activity (BUA)
kouichi-c-nakamura/DABEST-Matlab
MATLAB package to generate contrast plots
kouichi-c-nakamura/language-spike2
Spike2 language support for Atom.
kouichi-c-nakamura/Zotero-translator-SfN-2016
Society for Neuroscience Abstract 2016.js is a web translator for the bibliographic software, Zotero. This will allow you to store abstracts into your Zotero library. This translator works for Society for Neuroscience Abstracts from 2016 onwards.
kouichi-c-nakamura/allenCCF
Tools to work with Allen Inst CCF data in matlab
kouichi-c-nakamura/anzan_training
kouichi-c-nakamura/AP_histology
Histology processing
kouichi-c-nakamura/Atom-styles-less-for-MATLAB
styles.less file customization for MATLAB language
kouichi-c-nakamura/bio-formats-documentation
Bio-Formats documentation
kouichi-c-nakamura/Chan_Spike2
MATLAB tool to analyze neuroscience data derived from Spike2 acquisition software
kouichi-c-nakamura/CorrerationCoefficient
ImageJ plugin code written in JAVA for Nakamura K, Watakabe A, Hioki H, Fujiyama F, Tanaka Y, Yamamori T, Kaneko T (2007) Transiently increased colocalization of vesicular glutamate transporters 1 and 2 at single axon terminals during postnatal development of mouse neocortex: a quantitative analysis with correlation coefficient. Eur J Neurosci 26:3054–3067, http://doi.org/10.1111/j.1460-9568.2007.05868.x
kouichi-c-nakamura/CSL-Nature-DOI
Cytation Style Language (CSL) style for Nature with DOI URL links
kouichi-c-nakamura/CSL-Nature-shorter
Based on Nature's numbered style but only the first author is shown and title of paper is omitted.
kouichi-c-nakamura/CSL-Nature-shorter-plain
CSL
kouichi-c-nakamura/CSL_JNS_DOI
the-journal-of-neuroscience-doi.csl is CSL style definition for Zotero and other bibliographic software. The style is based on one for the Journal of Neuroscience, but with a link URL for DOI or, if DOI is not available, an URL (this can be link to PubMed entry or journal web site etc). The style is useful in written communication, such as emails.
kouichi-c-nakamura/fiji
A "batteries-included" distribution of ImageJ :battery:
kouichi-c-nakamura/imagej-matlab
MATLAB integration with ImageJ data structures and runtime.
kouichi-c-nakamura/ImagePlus2array
kouichi-c-nakamura/Kilosort2
Fast spike sorting with drift correction for up to a thousand channels
kouichi-c-nakamura/Kilosort2_wiki
kouichi-c-nakamura/mathjax_markdown_github
kouichi-c-nakamura/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
kouichi-c-nakamura/plugin-GUI
Software for processing, recording, and visualizing multichannel electrophysiology data
kouichi-c-nakamura/srtplayer
A MATLAB class that plays subtitles in *.srt format. Useful when you watch flims which lack subtitles.
kouichi-c-nakamura/translators
Zotero Translators
kouichi-c-nakamura/trialexp
kouichi-c-nakamura/wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
kouichi-c-nakamura/Zotero-translator-Nikkei-business-online
Zotero translator for Nikkei business online