This project translates data from an HCSRN-VDW into an OHDSI-OMOP common data model using SAS.
- This code requires an implemented HCSRN VDW data model. Here is where you can find out about the VDW Datamodel.
- Find information on how to become a member in The Book of OHDSI.
- If you can connect with OHDSI OMOP Vocabulary by going to Athena then you have the ability to get OHDSI OMOP Vocabulary data.
- Clone HCSRN-VDW-to-OHDSI-OMOP ... this project
- Download OHDSI OMOP Vocabulary from Athena
- Unzip the CSV files into the omop_vocab folder
- Edit Runtime Parameter Variables
- Save the file "./sas_etl/0-edit-run-main.sas" to "0-run-main.sas"
- Edit the file "./sas_etl/0-run-main.sas" to use your local settings
- Edit the file "./sas_etl/rcm_std_vars.sas" to point to local VDW
- If just trying to create the Research Code Management files then leave settings as they are and comment out the last two files (load OMOP and load OMOP Era).
- Run the file "0-run-main.sas" that you have edited.