Kaiser Permanente Washington Health Research Institute
Practical research for better health
Seattle, WA, USA
Pinned Repositories
CharlsonMacro
SAS code to calculate the Deyo version of the Charlson comorbidity score
HCSRN-VDW-to-OHDSI-OMOP
This project translates data from an HCSRN-VDW into an OHDSI-OMOP common data model using SAS.
heartsteps
Heart Steps 2.0 Application
konsepy
Framework for build NLP information extraction systems using regular expressions.
pmca
Dr. Rita Mangione Smith et al.'s Pediatric Medical Complexity Algorithm
public_vdw_assets
SAS Code/data for use in VDW programs
runrex
Library to aid in organizing, running, and debugging regular expressions against a large body of text.
vdw-census
VDW Census Demographics ETL & QA 2017
vdw_census_sas_toolkit
vdw_utilities
Useful utilities for data warehousers
Kaiser Permanente Washington Health Research Institute's Repositories
kpwhri/heartsteps
Heart Steps 2.0 Application
kpwhri/pmca
Dr. Rita Mangione Smith et al.'s Pediatric Medical Complexity Algorithm
kpwhri/HCSRN-VDW-to-OHDSI-OMOP
This project translates data from an HCSRN-VDW into an OHDSI-OMOP common data model using SAS.
kpwhri/Sentinel-Scalable-NLP
Sentinel Initiative-sponsored work on designing scalable solutions
kpwhri/spacy-ngram
SpaCy pipeline component for adding document or sentence-level ngrams.
kpwhri/public_vdw_assets
SAS Code/data for use in VDW programs
kpwhri/fe5_konsepy
Implementing FE5 variables in konsepy framework
kpwhri/konsepy
Framework for build NLP information extraction systems using regular expressions.
kpwhri/konsepy_nlp_template
Template for using konsepy for building NLP algorithms with regular expressions.
kpwhri/precise_nlp
Extract colorectal information from colonoscopy and pathology notes
kpwhri/vdw_census_sas_toolkit
kpwhri/runrex
Library to aid in organizing, running, and debugging regular expressions against a large body of text.
kpwhri/act_eye_extractor
kpwhri/anaphylaxis-runrex
Using runrex for certain anaphylaxis-related variables
kpwhri/CensusSpatialJoinSAS
Pulls in Census Shapefiles and performs a spatial join. Helpful for taking geocoded data and applying different map vintages.
kpwhri/ClarityNLP
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
kpwhri/corporutil
Utilities functions for getting statistics, etc. on a corpus.
kpwhri/dqt_api
kpwhri/dqt_ng
kpwhri/GEMSS
Getting folks to think about smoking cessation
kpwhri/HCSRNCensusDemogDec
kpwhri/kpwhri.github.io
Backend for kpwhri.github.io pages.
kpwhri/mhnav_pipeline
This NLP pipeline will use the output of `bratdb` to extract the features used in the MH Navigator model.
kpwhri/mml_utils
Create and run batches of metamaplite jobs
kpwhri/ndi_formatter
Format data for National Death Index (NDI) requests.
kpwhri/pcos-runrex
kpwhri/Sentinel-Acute-Pancreatitis
Sentinel Initiative Project for Detection of Acute Pancreatitis
kpwhri/snippy
Create snippets of text for manual review
kpwhri/social-isolation-runrex
Feature extraction for developing an algorithm to identify social isolation.
kpwhri/spatial_join_example