ksil91
Bioinformatics at NOAA-AOML and the Northern Gulf Institute. See @ksilnoaa for my work projects.
South Carolina Department of Natural ResourcesMiami, FL
Pinned Repositories
2016_Notebook
2bRAD_GATK
Genome-wide reference-based genotyping with 2bRAD
alpheus-gbs
Celegans_RNAprofiling
LMB-panel-2021
Repo for Delta bass manuscript, to be available soon. Still adding some data files and comments to code, but otherwise all there.
Ostrea_PopStructure
This repository contains code and notebooks detailing analyses of Genotype-by-Sequencing (GBS) data in the Olympia oyster (Ostrea lurida).
PS-Oly-Larvae-Growth
Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.
Scripts
Scripts for formatting and data analysis.
marineomics.github.io
Website for MarineOmics RCN-ECS. Hosts pages for panelist series and recommended practices for non-model genomics.
paper-oly-mbdbs-gen
ksil91's Repositories
ksil91/Ostrea_PopStructure
This repository contains code and notebooks detailing analyses of Genotype-by-Sequencing (GBS) data in the Olympia oyster (Ostrea lurida).
ksil91/Scripts
Scripts for formatting and data analysis.
ksil91/2016_Notebook
ksil91/PS-Oly-Larvae-Growth
Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.
ksil91/2bRAD_GATK
Genome-wide reference-based genotyping with 2bRAD
ksil91/alpheus-gbs
ksil91/Celegans_RNAprofiling
ksil91/LMB-panel-2021
Repo for Delta bass manuscript, to be available soon. Still adding some data files and comments to code, but otherwise all there.
ksil91/Grants
ksil91/GTseq-Pipeline
A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.
ksil91/ipyrad
Interactive assembly and analysis of RAD-seq data sets
ksil91/Ostrea-OA-Repo
ksil91/Ostrea-Scallop-OA-Repo
ksil91/PS_CommonGarden
Working repository for project looking at genetic differences among 3 populations in Puget Sound, WA.
ksil91/Rrunstruct
R package for running the program structure and comparing results from multiple runs
ksil91/strataG
StrStrataGKS is a modified version of the strataG package by Eris Archer, minimized in order to run Structure without installing too many other packages.
ksil91/tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake
ksil91/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files