ksil91

ksil91's Stars

• giscus/giscus

  A comment system powered by GitHub Discussions. :octocat: :speech_balloon: :gem:

  Language:TypeScript8.8k23343351

• RILAB/statements

  Successful Job Applications and Grants

  722701129

• popsim-consortium/stdpopsim

  A library of standard population genetic models

  Language:Python1261469890

• RemiAllio/MitoFinder

  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

  Language:Python9346515

• harvardinformatics/snpArcher

  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

  Language:Python73810033

• tobiasgf/lulu

  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

  Language:Shell6351617

• aakechin/NGS-PrimerPlex

  NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design

  Language:Python5556122

• jpuritz/dDocent

  a bash pipeline for RAD sequencing

  Language:Shell52125341

• limey-bean/Anacapa

  Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipes@berkeley.edu)and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).

  Language:Python43132919

• hariszaf/pema

  PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

  Language:Shell2734912

• grunwaldlab/Reproducible-science-in-R

  This site provides information on conducting reproducible science using the R language.

  Language:HTML149288

• ben-laufer/Tag-seq

  3’ Tag RNA-seq pipeline (Work in progress)

  Language:R10103

• joed3/eigenMT

  An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants

  Language:Python10238

• atcg/clustOpt

  Scripts for the optimization of RADseq clustering thresholds in population genetics

  Language:R9360

• jpuritz/EecSeq

  Protocol for Expressed Exome Capture Sequencing

  Language:Shell7618

• mhoban/rainbow_bridge

  Language:Nextflow511202

• hputnam/project_juvenile_geoduck_OA

  This repository provides data and scripts to analyze the influence of ocean acidification on juvenile geoduck DNA methylation and phenotype.

  Language:Jupyter Notebook45193

• AHuffmyer/ASH_Putnam_Lab_Notebook

  Open Lab Notebook

  Language:SCSS2100

• bricesarver/pseudo-it

  An approach that iteratively generates pseudoreferences, incorporating sample-specific variation and reducing mapping biases

  Language:Python2220

• lyl8086/find_sex_loci

  Find sex specific loci from genome-wide genetic markers.

  Language:Perl2101

• mitramenon/Hybrid-zone-mov

  Language:R2100

• rodriguez-ezpeleta/ABFT_popgentrace

  Language:Python2001