kuijjerlab/netZooPy

netZooPy is a network biology package implemented in Python.

netZooPy is tested on: (OS: Ubuntu + Macos) X (Language: Python v3.7 + Python v3.8 + Python v3.9)

Description

netZooPy is a Python package of network methods.

Zoo animals

(gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, SAMBAR, CONDOR, OTTER, and DRAGON.

Quick guide

Clone the repository into your local disk:

git clone https://github.com/netZoo/netZooPy.git

Then install netZooPy through pip:

cd netZooPy
pip3 install -e .

Upon completion you can load netZooPy in your python code through

import netZooPy

Conda installation

On anaconda.org you will find the conda recipes for all platforms. We recommend using conda environments to keep your analyses self-contained and reproducible.

To install netzoopy through conda:

conda install -c netzoo -c conda-forge netzoopy

User guide

Please refer to the documentation website for installation instructions and usage.

License

The software is free and is licensed under the GNU General License v3.0, see the file LICENSE for details.

Feedback/Issues

Please report any issues to the issues page.

Code of conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.