Pinned Repositories
CAVACHON
Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN
lionessR
Single sample network reconstruction in R
multi-omics-course
Repository for the multi-omics course
phcancer
Persistent homology on Lioness
PORCUPINE
PUMA
PUMA: PANDA Using MicroRNA Associations
PyPuma
Python implementation of PUMA
PySNAIL
Smooth-quantile Normalization Adaptation for Inference of co-expression Links
retriever
Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
SCORPION
Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks
kuijjerlab's Repositories
kuijjerlab/SCORPION
Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks
kuijjerlab/PySNAIL
Smooth-quantile Normalization Adaptation for Inference of co-expression Links
kuijjerlab/retriever
Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
kuijjerlab/lionessR
Single sample network reconstruction in R
kuijjerlab/CAVACHON
Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN
kuijjerlab/multi-omics-course
Repository for the multi-omics course
kuijjerlab/PORCUPINE
kuijjerlab/phcancer
Persistent homology on Lioness
kuijjerlab/PUMA
PUMA: PANDA Using MicroRNA Associations
kuijjerlab/PyPuma
Python implementation of PUMA
kuijjerlab/BiHiDef
Bipartite adaptation of HiDeF using BRIM
kuijjerlab/HiC_networks
Pipeline to convert Hi-C into networks, and perform network analysis on the 3D genome. Code developed by Gabriel Stav
kuijjerlab/LIONESS_StarProtocols
Code to support the LIONESS STAR Protocol
kuijjerlab/netZooPy
netZooPy is a network biology package implemented in Python.
kuijjerlab/pypanda
Python implementation of PANDA and LIONESS
kuijjerlab/pysambar
SAMBAR (Subtyping Agglomerated Mutations By Annotation Relations) python implementation
kuijjerlab/SAMBAR
R package SAMBAR
kuijjerlab/sponge
A Python package to generate prior gene regulatory networks.