Pinned Repositories
AlphaSynuclein
copied-io-2013-slides
Personal modifications to Google IO 2013 HTML slide generator
cutadapt
cutadapt removes adapter sequences from sequencing reads
FitEnsemble
HMCNotes
openmoltools
repex
Python replica-exchange simulation facility for OpenMM.
kyleabeauchamp's Repositories
kyleabeauchamp/mirrorsnake
kyleabeauchamp/xopen
Open any compressed file in Python
kyleabeauchamp/lofreq
LoFreq Star: Sensitive variant calling from sequencing data
kyleabeauchamp/scipy
Scipy library main repository
kyleabeauchamp/pymc
PyMC: Bayesian Stochastic Modelling in Python
kyleabeauchamp/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
kyleabeauchamp/conda-recipes-1
build and test recipes for conda
kyleabeauchamp/ThermoPyL
Tools for ThermoML parsing
kyleabeauchamp/pymbar
Python implementation of the multistate Bennett acceptance ratio (MBAR)
kyleabeauchamp/mdtraj
Molecular Dynamics Trajectory and File IO
kyleabeauchamp/exac_browser
Browser for ExAC consortium data
kyleabeauchamp/cutadapt
cutadapt removes adapter sequences from sequencing reads
kyleabeauchamp/fah-projects
kyleabeauchamp/FAHMunge
Tools for Munging Folding@Home datasets
kyleabeauchamp/conda-recipes
kyleabeauchamp/msmbuilder
(Hidden) Markov models for Biomolecular Dynamics
kyleabeauchamp/slidedeck
Beautiful HTML5 slides in markdown. A easy to use fork of the google-io-2012 slide deck
kyleabeauchamp/GroupMeetingMay2015
kyleabeauchamp/osprey
osprey is the plumbing for machine learning hyperparameter optimization.
kyleabeauchamp/openmoltools
kyleabeauchamp/ParmEd
Parameter/topology editor and molecular simulator
kyleabeauchamp/yank
GPU-accelerated calculation of ligand binding affinities in implicit and explicit solvent using alchemical free energy methodologies
kyleabeauchamp/gbff
Tools for Bayesian forcefield development
kyleabeauchamp/AlphaSynuclein
kyleabeauchamp/Yank-Manuscript
kyleabeauchamp/BoxSize
kyleabeauchamp/chargetests
kyleabeauchamp/ensembler
Software pipeline for automating omics-scale protein modeling and simulation setup.
kyleabeauchamp/pystarlib
Automatically exported from code.google.com/p/pystarlib
kyleabeauchamp/FullStack