kyungtaekLIM

kyungtaekLIM's Stars

• xo/usql

  Universal command-line interface for SQL databases

  Language:Go9.1k123374356

• dinedal/textql

  Execute SQL against structured text like CSV or TSV

  Language:Go9.1k16692300

• GoogleCloudPlatform/python-docs-samples

  Code samples used on cloud.google.com

  Language:Jupyter Notebook7.5k4304.4k6.5k

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k768.1k922

• mithrandie/csvq

  SQL-like query language for csv

  Language:Go1.5k248866

• siznax/wptools

  Wikipedia tools (for Humans): easily extract data from Wikipedia, Wikidata, and other MediaWikis

  Language:Python5742316378

• james-bowman/nlp

  Selected Machine Learning algorithms for natural language processing and semantic analysis in Golang

  Language:Go451241245

• danielfrg/tsne

  A python wrapper for Barnes-Hut tsne

  Language:C++4052628132

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl37879320218

• morris-lab/CellOracle

  This is the alpha version of the CellOracle package

  Language:Python324721256

• axiak/pyre2

  Python wrapper for RE2

  Language:Python29593739

• deeptools/HiCExplorer

  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

  Language:Python2351563370

• danaugrs/go-tsne

  t-Distributed Stochastic Neighbor Embedding (t-SNE) in Go

  Language:Go208121125

• aotimme/gocsv

  Command-line CSV processing utility.

  Language:Go200164021

• abahgat/webapp2-user-accounts

  A sample implementation of user account management with webapp2.

  Language:Python17826255

• aws-quickstart/quickstart-mongodb

  AWS Quick Start Team

  1511956113

• nf-core/methylseq

  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

  Language:Nextflow150150143145

• theislab/sfaira

  data and model repository for single-cell data

  Language:Python135835111

• knok/rcnn-text-classification

  Recurrent Conventinal NN Text Classification for chainer

  Language:Python13011542

• go-iiif/go-iiif

  Go package to implement the IIIF Image API.

  Language:Go904919

• nunofonseca/irap

  integrated RNA-seq Analysis Pipeline

  Language:R83156635

• uoregon-libraries/rais-image-server

  RAIS: A IIIF-compliant, 100% open source image server for blazing-fast deep zooming

  Language:Go787366

• dpeerlab/Harmony

  Harmony framework for connecting scRNA-seq data from discrete time points

  Language:Jupyter Notebook4682112

• StevenWingett/HiCUP

  Hi-C data processing pipeline

  Language:Perl3336512

• broadinstitute/gdctools

  Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons

  Language:Python3115704

• UcarLab/AMULET

  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

  Language:Python304245

• gersteinlab/MUSIC

  MUltiScale enrIchment Calling for ChIP-Seq Datasets

  Language:C++231281

• jmonlong/sQTLseekeR

  R package to detect splicing QTLs (sQTLs)

  Language:R1551114

• cran/argparser

  :exclamation: This is a read-only mirror of the CRAN R package repository. argparser — Command-Line Argument Parser. Homepage: https://bitbucket.org/djhshih/argparser Report bugs for this package: https://bitbucket.org/djhshih/argparser/issues

  Language:R430

• tomiilab/homologysearch

  Language:Python2