lachioma

lachioma's Stars

• timsainb/noisereduce

  Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

  Language:Jupyter Notebook1.5k2377231

• AdaptiveMotorControlLab/CEBRA

  Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

  Language:Python908353577

• SpikeInterface/spikeinterface

  A Python-based module for creating flexible and robust spike sorting pipelines.

  Language:Python521281.4k186

• machenslab/dPCA

  An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

  Language:Jupyter Notebook279263394

• AllenInstitute/deepinterpolation

  Language:Python209113650

• MatrixDJ96/EZBlocker2

  EZBlocker 2 - Ad muter/blocker for Spotify

  Language:C#141145214

• DrosteEffect/BrewerMap

  [MATLAB] The complete palette of ColorBrewer colormaps. Simple selection by scheme name and map length.

  Language:MATLAB1209432

• Julie-Fabre/bombcell

  Automated quality control, curation and neuron classification of spike-sorted electrophysiology data

  Language:MATLAB11563728

• BlohmLab/NSCI801-QuantNeuro

  NSCI 801 (Queen's U) Quantitative Neuroscience course materials

  Language:Jupyter Notebook1139024

• m-beau/NeuroPyxels

  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

  Language:Jupyter Notebook11243527

• flatironinstitute/nemos

  NEural MOdelS, a statistical modeling framework for neuroscience.

  Language:Python8241428

• circstat/circstat-matlab

  Matlab Circular Statistics Toolbox

  Language:MATLAB7992341

• umyelab/LabGym

  Quantify user-defined behaviors.

  Language:Python692717

• ZexinChen/AlphaTracker

  AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and produces reliable tracking of multiple unmarked animals. An easy-to-use user interface further enables manual inspection and curation of results.

  Language:Jupyter Notebook6572216

• neuroethology/MARS

  End-user version of the Mouse Action Recognition System (MARS)

  Language:Python5862010

• ShanechiLab/PSID

  Preferential Subspace Identification Algorithm

  Language:MATLAB44729

• healthonrails/annolid

  An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.

  Language:Jupyter Notebook415449

• arthur-pe/slicetca

  Library to perform Slice Tensor Component Analysis (sliceTCA)

  Language:Jupyter Notebook35414

• agosztolai/MARBLE

  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets. https://agosztolai.github.io/MARBLE/

  Language:Python28344

• glaserlab/sca

  Sparse component analysis

  Language:Jupyter Notebook24127

• chenxinfeng4/ArControl

  ArControl: Arduino UNO/Mega based, visual programming & real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks.

  Language:C++17725

• ShuJiaLab/ACsN

  Automatic Correction for sCMOS-related Noise

  Language:MATLAB17506

• ThomasAkam/Point_Grey_Bonsai_multi_camera_acquisition

  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.

  Language:Python13002

• JorritMontijn/ZETA

  Zenith of Event-based Time-locked Anomalies

  Language:MATLAB12413

• XinyueMa-neuro/ElecFeX

  MATLAB-based electrophysiological feature extraction toolkit

  921

• bonsai-rx/sleap

  A Bonsai interface for real-time multi-animal pose tracking using SLEAP

  Language:C#64116

• musall/WidefieldImager

  Pre-processing pipeline for widefield data

  Language:MATLAB6129

• thomasdeneux/brick

  a general-purpose Matlab toolbox

  Language:HTML5608

• EveyZhang/Spike-Dimensionality-Reduction-by-Laplacian-Eigenmaps

  Effective dimensionality reduction for visualizing neural dynamics by Laplacian Eigenmaps

  Language:MATLAB3100

• DIY-NAMICsystem/Hardware_Documentation

  Build components and detailed instructions for assembly

  Language:Jupyter Notebook2121