laminlabs/lamindb

Issues

• 📝 `Curate` should have the `.validate()` and `.save_artifact()` et al. documented

  #1861 opened a month ago by falexwolf
  2

• validate should not require categoricals to be passed - unhelpful error message in any case

  #1867 opened a month ago by Zethson
  0

• MappedCollection reported an error on the specific data set

  #1845 opened a month ago by gefujing
  4

• Support csc sparse matrices in MappedCollection

  #1873 opened a month ago by Koncopd
  0

• Wrong labels in issue templates

  #1868 opened a month ago by Zethson
  0

• 🎨 Confusing name: `Curate.add_validated_from`

  #1860 opened a month ago by falexwolf
  0

• 🎨 Why is `list_source` called this way and not `.sources` or similar?

  #1863 opened a month ago by falexwolf
  1

• 📝 Show the bionty relationships on the `Artifact` docs page

  #1862 opened a month ago by falexwolf
  0

• Clearer logging for `Curate.lookup`

  #1858 opened a month ago by falexwolf
  1

• Bulk RNA seq guide accesses private methods

  #1857 opened a month ago by Zethson
  0

• Return type: AnnDataCurator does not render

  #1786 opened 2 months ago by Zethson
  2

• columns attribute of from_df not well documented

  #1856 opened a month ago by Zethson
  0

• finish() support for CI environments

  #1851 opened a month ago by Zethson
  0

• Custom dataloader for scvi-tools

  #1826 opened a month ago by canergen
  5

• finish() has no example and track comes after finish

  #1848 opened a month ago by Zethson
  0

• Document how to cxg curate in ln.Curate()

  #1825 opened a month ago by Zethson
  0

• Consistently refer to versions without the `.version` tag set as revisions

  #1843 opened a month ago by falexwolf
  0

• Rename `is_new_version_of` to `revises` in a backward-compatible way

  #1831 opened a month ago by falexwolf
  0

• add_x_ from of curate does not take the passed source into account

  #1837 opened a month ago by Zethson
  0

• FutureWarning in can_validate

  #1830 opened a month ago by Zethson
  0

• Consider printing warning or erroring when passed source to curate cannot be found

  #1833 opened a month ago by Zethson
  0

• Overloaded usage of word `term` for output

  #1835 opened a month ago by Zethson
  0

• Consider unit tests for save_vitessce_config

  #1731 opened a month ago by Zethson
  1

• 🐛 `.get()` doesn't work with `using`

  #1718 opened a month ago by sunnyosun
  4

• Not using rst headers in __init__.py

  #1821 opened a month ago by Zethson
  0

• 🚸 Easier way to add a `ULabel` to a transform

  #1819 opened a month ago by falexwolf
  3

• More details for the Artifact.from_x constructors

  #1810 opened a month ago by Zethson
  1

• MappedCollection is leaking memory

  #1814 opened a month ago by agemagician
  1

• FutureWarning when loading papalexi dataset

  #1806 opened 2 months ago by Zethson
  0

• Curate does not associate Labels with Features

  #1801 opened 2 months ago by Zethson
  1

• Display useful values instead of IDs

  #1802 opened 2 months ago by Zethson
  1

• Curate is badly documented

  #1793 opened 2 months ago by Zethson
  0

• Curate suggests saving index terms but it's not part of the fields

  #1792 opened 2 months ago by Zethson
  1

• Consider negative examples for curate

  #1788 opened 2 months ago by Zethson
  0

• Grammar off for unvalidated terms

  #1789 opened 2 months ago by Zethson
  0

• search searches for substrings in uid

  #1758 opened 2 months ago by insavchuk
  4

• Validate does not have a `source` parameter

  #1778 opened 2 months ago by Zethson
  1

• Passing `source` to `inspect` doesn't seem to have an effect.

  #1779 opened 2 months ago by Zethson
  1

• Missleading "create new record via" message

  #1776 opened 2 months ago by Zethson
  1

• Improve contributors guide

  #1765 opened 2 months ago by Zethson
  0

• System error on re-running CellMarker.add_synonym

  #1759 opened 2 months ago by insavchuk
  5

• ⚡ >6s of white screen when first loading an instance page

  #1761 opened 2 months ago by falexwolf
  3

• Accept list of records in `artifact.features.add_labels`

  #1743 opened 2 months ago by sunnyosun
  1

• reference target not found: lamindb.core.Registry.filter -> filter method references not working

  #1739 opened 2 months ago by Zethson
  7

• 🐛 `.from_values()` should return [] instead of None

  #1727 opened 2 months ago by sunnyosun
  0

• ✏️ Auto-convert search keyword to string

  #1725 opened 3 months ago by sunnyosun
  0

• 🐛 Upon deletion of managed storage location, sync the hub

  #1715 opened 3 months ago by falexwolf
  4

• Marker standardization doesn't handle marker name duplication

  #1717 opened 3 months ago by insavchuk
  0

• Cell-level metadata

  #1713 opened 3 months ago by oskbor
  1

• Enable to set transform name via `ln.settings.transform`

  #1710 opened 3 months ago by falexwolf
  1