Issues
- 8
- 0
- 0
🚸 Upon re-running `init` with an additional schema module (or less schema module) update settings.env
#2181 opened by falexwolf - 0
🚸 Creating a local instance for the cwd
#2180 opened by falexwolf - 0
- 0
📝 Investigate cell type output
#2178 opened by falexwolf - 1
- 0
📝 Improve "manage biological registries guide"
#2175 opened by falexwolf - 0
- 0
- 0
Curator saving records with a different version than the saved records results in duplicate key errors
#2165 opened by Zethson - 0
- 0
📝 Give an example in the `Artifact` API doc about how to make a new version through `key`
#2159 opened by falexwolf - 0
🚸 Ensure that if an artifact is saved with a physical key, it won't overwrite an existing artifact if the user wants a new version
#2160 opened by falexwolf - 0
- 0
Can the Curator.validate() function be more efficient?
#2154 opened by Zethson - 0
Several "! run input wasn't tracked, call `ln.track()` and re-run in arrays guide"
#2150 opened by Zethson - 0
- 2
Curator validated logging not working?
#2099 opened by Zethson - 4
🚸 Rename `import_from_source()` to `import_source()`
#2127 opened by falexwolf - 0
`Curator.validate()` should not validate against synonyms and run `standardize()` under the hood
#2147 opened by Zethson - 14
AnnData automatically converts int index to str, therefore matching some Gene synonyms
#2124 opened by felix0097 - 1
🚸 Validate minimum `uid` length
#2143 opened by falexwolf - 0
AttributeError: 'str' object has no attribute 'field' when passing "symbol" instead of "bt.Gene.symbol"
#2091 opened by Zethson - 0
Repeated `validate()` calls result in repeated stdout of `saving validated terms of XYZ`
#2110 opened by Zethson - 0
Document annotate in query tutorial
#2138 opened by Zethson - 1
IntegrityError: UNIQUE constraint failed: bionty_gene.ensembl_gene_id when repeatedly validating example dataset
#2137 opened by Zethson - 7
Loading dataset from a different instance that does not have all schemas of the current instance errors
#2117 opened by Zethson - 3
🚸 Indenting and relevance
#2071 opened by falexwolf - 0
Cannot validate genes stored in DataFrame
#2098 opened by Zethson - 1
`add_validated_from_var_index` is suggested but it doesn't even exist anymore
#2108 opened by Zethson - 1
🚸 Enabling to append to a collection
#2073 opened by falexwolf - 0
- 0
Reduce verbosity of `.describe()`
#2112 opened by Zethson - 0
✨ Need an optional way of copying data during transfer
#2111 opened by falexwolf - 0
Improve documentation of Curator
#2109 opened by Zethson - 1
🚸 Why do I get an option to look up values?
#2070 opened by falexwolf - 1
Robust support of validating multiple values
#2101 opened by sunnyosun - 1
🐛 `print_types=True` seems to lead to weird output on main branch, it's OK in the release
#2100 opened by falexwolf - 0
Warn if working with a non-latest version of an artifact
#2093 opened by Koncopd - 0
- 1
TypeError: AnnDataCurator._update_registry_all() got an unexpected keyword argument 'validated_only' when running curator.add_new_from("all")
#2088 opened by Zethson - 1
🚸 Throw a `ValidationError` instead of `ValueError` when trying to re-assigning synonyms
#2074 opened by falexwolf - 0
🚸 Raise a `ValidationError` rather than a `ValueError`
#2072 opened by falexwolf - 0
🚸 Unnecessarily verbose logging in `Curator`
#2084 opened by falexwolf - 0
- 0
Discrepancy in behavior of validate in Curator and low level API for Pandas NAs
#2079 opened by Zethson - 0
- 0
⚡ Deleting a transform is slow
#2069 opened by falexwolf - 1
📝 Improve the "Lamin Process" graphic of the API
#2068 opened by falexwolf