lanagarmire

Pinned Repositories

Asgard
Language:R40 2 1420
COVID19-Drugs-LungInjury
Language:R7 2 01
cox-nnet
Language:Python47 4 016
deepimpute
An accurate and efficient deep learning method for single-cell RNA-seq data imputation
Language:Python87 7 2827
DeepProg
Deep-Learning framework for multi-omic and survival data integration
Language:Python79 4 521
Granatum
Language:R20 4 1411
lilikoi
Language:Jupyter Notebook9 4 68
NMFEM
Language:R15 6 26
Single-cell-drug-repositioning
Language:R14 2 67
SSrGE
Language:Python33 4 119

lanagarmire's Repositories

lanagarmire/deepimpute
An accurate and efficient deep learning method for single-cell RNA-seq data imputation
Language:Python87 7 2827
lanagarmire/DeepProg
Deep-Learning framework for multi-omic and survival data integration
Language:Python79 4 521
lanagarmire/Asgard
Language:R40 2 1420
lanagarmire/SSrGE
Language:Python33 4 119
lanagarmire/Single-cell-drug-repositioning
Language:R14 2 67
lanagarmire/COVID19-Drugs-LungInjury
Language:R7 2 01
lanagarmire/Cox-nnet-v2.0
Updated version 2 of Cox-nnet
Language:Python6 1 03
lanagarmire/two-stage-cox-nnet
Language:Python5 2 12
lanagarmire/multiomics_review_manubot
Language:HTML3 1 0
lanagarmire/AD_multi_Omics
Language:Jupyter Notebook2 1 0
lanagarmire/lilikoi2
Language:R2 2 64
lanagarmire/preeclampsa_lipidomics
Preeclampsia lipidomics
Language:R2 2 0
lanagarmire/ST_benchmark
Language:R2 2 01
lanagarmire/granatumx
The next generation of graphical single-cell RNA-seq analysis pipeline for genomics scientists
Language:Python1 2 0
lanagarmire/Originator
Computational Framework Separating Single-Cell RNA-Seq by Genetic and Contextual Information
Language:R1 0 0
lanagarmire/pretermBirth_metabolomics
Language:R1 3 0
lanagarmire/RNASeqPowerCalculator
Language:R1
lanagarmire/CB_DNAm_PE
Language:R0 1 01
lanagarmire/PE_delivery
Preeclampsia patient delivery timing prediction
Language:R0 1 00
lanagarmire/asgard_space
Asgard space location
2 0
lanagarmire/BC_imaging
Single-cell based prognosis modeling identifies new breast cancer survival subtypes by cell-cell interactions
Language:Jupyter Notebook1 0
lanagarmire/bioinf602-603
Language:SCSS1 0
lanagarmire/COBRE_methyl
Multi-omics Analysis of Umbilical Cord Hematopoietic Stem Cells from a Multi-ethnic Cohort of Hawaii Reveals the Transgenerational Effect of Maternal Pre-Pregnancy Obesity
Language:Jupyter Notebook
lanagarmire/Cox_nnet_PyTorch
Cox-nnet Pytorch
lanagarmire/data-portal
Language:JavaScript1 0
lanagarmire/Discover-overlooked-complications-after-PE-using-EHR
R codes for manuscript "Discover overlooked complications after preeclampsia using electronic health records"
Language:R0 0
lanagarmire/lanagarmire.github.io
Language:HTML2 03
lanagarmire/PE_long_term_effects
code for project "Discover overlooked complications after preeclampsia using electronic health records from three real-world medical datasets"
lanagarmire/scRNA_cell_deconv_benchmark
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
1
lanagarmire/TransDeepImpute
1 0