An implementation to generates VCF files containing Single Nucleotide Variant Mutational Space of a genomic region or a gene based on the Reference Genome.
If you make use of this software for academic purposes, please cite the software 10.5281/zenodo.7562930.
Please ensure you have the following software installed on your machine:
docker
You can get docker here
Run the following command in the root directory of this project
docker build -t snv_scape .
Example for a hypothetical gene
docker run --rm -v $(pwd):/app --name snv_scape_container snv_scape python /app/snv_scape/snv_scape.py --gene_name=TESTGENE
This should result in the following output:
...