Pinned Repositories
MetaDomainHotSpot
metadome
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
DataScienceNotebook
A general purpose clean example on how to construct R and Python notebooks using Docker
gene_lists
List of gene lists for genomic analyses.
KeCo
An implementation to a kernel based co-agreement algorithm
laurensvdwiel.github.io
MetaDome-vcf-annotation
positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
PUBGENIE
PUBGENIE (PUBlishedGENEvaRIantIdentifier) is a lightweight web server designed to explore and identify variants published in rare disease publications
SpatialClustering
The spatial clustering algorithm used for the publication "Spatial Clustering of De Novo Missense Mutations Identifies Candidate Neurodevelopmental Disorder-Associated Genes" (https://doi.org/10.1016/j.ajhg.2017.08.004)
laurensvdwiel's Repositories
laurensvdwiel/SpatialClustering
The spatial clustering algorithm used for the publication "Spatial Clustering of De Novo Missense Mutations Identifies Candidate Neurodevelopmental Disorder-Associated Genes" (https://doi.org/10.1016/j.ajhg.2017.08.004)
laurensvdwiel/DataScienceNotebook
A general purpose clean example on how to construct R and Python notebooks using Docker
laurensvdwiel/PUBGENIE
PUBGENIE (PUBlishedGENEvaRIantIdentifier) is a lightweight web server designed to explore and identify variants published in rare disease publications
laurensvdwiel/gene_lists
List of gene lists for genomic analyses.
laurensvdwiel/KeCo
An implementation to a kernel based co-agreement algorithm
laurensvdwiel/laurensvdwiel.github.io
laurensvdwiel/MetaDome-vcf-annotation
laurensvdwiel/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
laurensvdwiel/SNV-Scape
Generates a VCF of the Single Nucleotide Variant Mutational Space of a genomic region or gene based on the Reference Genome
laurensvdwiel/SpliceAI
Containerized version of SpliceAI
laurensvdwiel/TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.