Add gradient magnitude computation program LN2_GRAMAG
ofgulban opened this issue · 2 comments
ofgulban commented
It is currently becoming more and more handy to have a fast / ram efficient gradient magnitude computation. I should translate the gradient magnitude methods from https://github.com/ofgulban/segmentator to LayNii.
- Add gradient magnitude without RAM inflation (do not hold gradient images, directly compute gradient magnitude per voxel). Important for e.g. whole brain 0.1 mm human brain images.
- Add circular difference option for phase images (-pi to pi range).
ofgulban commented
I should add a circular difference option to compute gradients on phase images (e.g. -pi to pi).
ofgulban commented
Circular difference option added
See the images below for the difference between normal gradient magnitude and "circular" gradient magnitude outputs:
- Upper left is a phase image.
- Upper right is "normal" gradient magnitude.
- Lower left if circular gradient magnitude.
- Colormaps are equal between gradient magnitude images.
- Incorrectly inflated differences around phase wraps are visible in the "normal" gradient magnitude image (upper right).