ofgulban
I have received my PhD in 2020 from Maastricht University with my thesis titled "Imaging the human auditory system at ultra-high magnetic fields".
Brain InnovationMaastricht, The Netherlands
Pinned Repositories
LAYNII
Stand alone fMRI software suite for layer-fMRI analyses.
gif_your_nifti
How to create fancy GIFs from an MRI brain image
bvbabel
A lightweight Python library for reading & writing BrainVoyager file formats.
compoda
Simplex space operations for compositional data implemented in Python.
flooding_brains
Creating mesmerizing brain animations by playing with geodesic distances.
iphigen
A command-line program for n-dimensional image enhancement and color balancing.
LAYNII_extras
Auxiliary scripts, bits & pieces built around LayNii
segmentator
3D MRI data exploration and segmentation tool.
slowest-particle-simulator-on-earth
A half-serious project to generate **very** serious brain explosions.
pydeface
defacing utility for MRI images
ofgulban's Repositories
ofgulban/segmentator
3D MRI data exploration and segmentation tool.
ofgulban/iphigen
A command-line program for n-dimensional image enhancement and color balancing.
ofgulban/bvbabel
A lightweight Python library for reading & writing BrainVoyager file formats.
ofgulban/slowest-particle-simulator-on-earth
A half-serious project to generate **very** serious brain explosions.
ofgulban/compoda
Simplex space operations for compositional data implemented in Python.
ofgulban/flooding_brains
Creating mesmerizing brain animations by playing with geodesic distances.
ofgulban/LAYNII_extras
Auxiliary scripts, bits & pieces built around LayNii
ofgulban/meso-MRI
Processing scripts for in vivo mesoscopic MRI at 0.35 mm isotropic resolution.
ofgulban/cortical-auditory-atlas
Resources from our human cortical auditory areas project.
ofgulban/exploding_brains
Particle simulations for exploding brains in Julia.
ofgulban/k_particles
OHBM 2023 Brainhack project
ofgulban/minimalist_psychopy_examples
Simple Psychopy scripts.
ofgulban/mp2ragelib
MP2RAGE functions implemented in the way I understand better :)
ofgulban/2022_OHBM_brainhack_proceedings
Templates for the hackathon proceedings
ofgulban/birdbrain
A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)
ofgulban/BrainBox
BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.
ofgulban/connectome_atlas_conversions
Various Nifti, Cifti, Gifti conversions...
ofgulban/fmriflows
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
ofgulban/gif_your_nifti
Create gifs from nifti files.
ofgulban/graynet
Subject-wise networks from structural MRI (thickness, gray matter density, curvature, gyrification)
ofgulban/heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
ofgulban/minimalist_cython_examples
Simple cython examples.
ofgulban/neuroelf-matlab
NeuroElf (MATLAB)
ofgulban/ofgulban.github.io
Personal page https://ofgulban.github.io/.
ofgulban/openMorph
Curated list of open-access databases with human structural MRI data
ofgulban/OpenScienceRoom2019
Schedule and resources from the OHBM Open Science Room: Rome 2019
ofgulban/parcellation_fragmenter
Fragments FreeSurfer parcellation annotation in N-equal sized parcels
ofgulban/pydeface
defacing utility for MRI images
ofgulban/scikit-image
An old version of scikit-image modified to work with another package (https://github.com/ofgulban/segmentator)
ofgulban/VASOlib
VASO MRI pulse sequence related equations implemented for self study purposes :)