layerfMRI/LAYNII

Issues

• Applying LN2_LAYERS to other brain measures

  #98 opened 2 months ago by torilynnking
  0

• LN_NOISE_KERNEL: How to estimate anisotropic smoothness from its output?

  #97 opened 3 months ago by samtorrisi
  4

• LN2_LAYERS requires a lot of RAM during with whole brain 0.25 isotropic resolution input

  #95 opened 7 months ago by marcobarilari
  11

• Add image derivative programs and their circular versions for phase images

  #90 opened 3 months ago by ofgulban
  1

• Add divergence program LN2_DIVERGENCE

  #68 opened 3 months ago by ofgulban
  1

• Add LN2_SENSITIVITY and LN2_SPECIFICITY programs

  #80 opened a year ago by ofgulban
  0

• LN_BOCO issue (probably data type issue) with very large fMRI data

  #93 opened 8 months ago by zqsha
  7

• Question about creating EPI reference

  #81 opened 5 months ago by zqsha
  4

• Make a video showing how to use Freesurfer surfaces together with LN2_LAYERS

  #96 opened 7 months ago by ofgulban
  1

• Inquiry about Morphological Characteristics Calculation for Cortical Layers

  #94 opened 8 months ago by Changwen-Wu
  6

• Frontal lobe correction

  #92 opened 8 months ago by zqsha
  7

• LN_LAYER_SMOOTH not detecting layers

  #89 opened 10 months ago by joshjcorbett
  6

• Edge case in LN2_PATCH_FLATTEN fills in zeros in the input values

  #91 opened 10 months ago by ofgulban
  0

• how to generate the value of cortical depth

  #86 opened 10 months ago by alexayue
  1

• LN2_GRAMAG returning all zeros when 'scl slope' nifti header is 0

  #88 opened a year ago by ofgulban
  1

• Add min, max, and median projection parametrized by a window size to LN_INTPRO

  #87 opened a year ago by ofgulban
  2

• LN2_PROFILE mask option

  #45 opened a year ago by layerfMRI
  1

• v2.5.1 for Linux, is it missing?

  #83 opened a year ago by ulloaa
  4

• Remove noise on the VASO images

  #82 opened a year ago by zqsha
  2

• Tutorials for LN2_COLUMNS

  #84 opened a year ago by zqsha
  3

• Converting Freesurfer segmentation to LayNii rim format required by LN2_LAYERS

  #78 opened a year ago by SMScottLee
  20

• Add LN2_RIM_POLISH

  #77 opened a year ago by ofgulban
  3

• Add LN2_NEIGHBOR_MATH

  #72 opened a year ago by ofgulban
  0

• Add freesurfer and brainvoyager options to LN2_RIMIFY

  #74 opened a year ago by ofgulban
  2

• dicom to nifti

  #79 opened a year ago by zqsha
  1

• Add 1st order neighbour finder program LN2_NEIGHBORS

  #66 opened a year ago by ofgulban
  2

• Add flat to folded space projection program LN2_PATCH_UNFLATTEN

  #69 opened a year ago by ofgulban
  2

• Add gradient magnitude computation program LN2_GRAMAG

  #65 opened a year ago by ofgulban
  2

• Print maximum distance between points in LN2_COLUMNS and LN2_IFPOINTS

  #70 opened a year ago by ofgulban
  1

• Add LN2_PATCH_FLATTEN_2D program

  #71 opened a year ago by ofgulban
  2

• Improvements on LN2_MULTILATERATE and LN2_VORONOI

  #75 opened a year ago by ofgulban
  0

• LN_SKEW errors back with: ** invalid option, '-timeseries'

  #73 opened a year ago by byronphy
  5

• Maximum datasize in LayNii is not clear.

  #54 opened 2 years ago by layerfMRI
  2

• Performing Layer Analysis on CA1 Hippocampal Subfield

  #63 opened 2 years ago by dayanahayek
  7

• build and push new docker image to docker hub on release

  #64 opened 2 years ago by Remi-Gau
  6

• Problem running LN2_LAYERS on CentOS 7

  #67 opened 2 years ago by Figsandcitrus
  4

• A question about the usage of LayNii in Huber et al 2018.

  #58 opened 2 years ago by layerConnectome
  3

• The part about docker is not released (yet)

  #60 opened 2 years ago by layerfMRI
  10

• Add 4D input and output capability to LN2_PATCH_FLATTEN

  #59 opened 2 years ago by ofgulban
  1

• Laynii version number in 'Citation.cff'

  #56 opened 2 years ago by 27-apizzuti
  0

• Getting layers in EPI space

  #47 opened 2 years ago by giobattistella
  6

• Holes in the middle gray matter file cause problems in LN2_LAYERS and LN2_MULTILATERATE

  #53 opened 2 years ago by AtenaAkbari
  4

• LN2_UVD_FILTER not included in make all

  #57 opened 2 years ago by sdres
  1

• LN2_LAYERS - empty equivol files

  #55 opened 2 years ago by ravenep
  8

• LN2_PROFILE extracting fMRI time series for each layer

  #46 opened 3 years ago by layerConnectome
  1

• Activation Image resolution Delta bold/vaso exmaple data set

  #44 opened 2 years ago by Frasera1975
  5

• LN2_MULTILATERATE perimeter_chunk is an empty output file

  #48 opened 3 years ago by AtenaAkbari
  11

• Column generation problem for LN_COLUMNAR_DIST

  #50 opened 3 years ago by yyinghua
  6

• Issue in test.sh: invalid option

  #49 opened 3 years ago by jbteves
  1

• GRE field map for laminar fMRI

  #43 opened 3 years ago by giobattistella
  2