lazear/sage

Issues

• QC metrics

  #168 opened 19 days ago by KlemensFroehlich
  0

• Unspecific search - peptidomics

  #167 opened 20 days ago by ErikHartman
  1

• How does sage do MBR?

  #165 opened 24 days ago by Cajac102
  3

• Using Sage for HLA Peptides

  #139 opened 24 days ago by theGreatHerrLebert
  4

• Error using docker image on ARM processor

  #155 opened 24 days ago by kretep
  1

• Not able to conduct open search

  #164 opened 24 days ago by mansi123-rana
  2

• Amino acid substitutions as variable modifications

  #163 opened 2 months ago by tommasomari
  4

• ram consumption

  #161 opened 3 months ago by KlemensFroehlich
  3

• [Docs] Fragment masses are present

  #157 opened 3 months ago by jspaezp
  1

• Memory consumption for extremely large search spaces

  #97 opened a year ago by grosenberger
  8

• COBS instead of inverted index?

  #146 opened 5 months ago by jianshu93
  1

• fatal runtime error: stack overflow

  #131 opened 10 months ago by picciama
  5

• diaPASEF first tests

  #123 opened a year ago by KlemensFroehlich
  27

• discrepancies in results between penultimate and latest version

  #148 opened 7 months ago by animesh
  2

• DIA from timsconvert not working

  #150 opened 7 months ago by animesh
  2

• Sage for iTRAQ data

  #142 opened 7 months ago by bynjh007
  11

• Unintuitive behaviour of the 'precursor_charge' setting in the .json config.

  #137 opened 7 months ago by MatteoLacki
  1

• Decharged precursors and tolerance

  #132 opened 7 months ago by glormph
  7

• [Feature Request] Sage output as a pepXML file

  #130 opened 7 months ago by sciordia
  5

• Changing "report_psms" to a super high value (eg >> 500) seems necessary to find peptides of very high rank (eg < 5)

  #143 opened 7 months ago by gsaxena888
  6

• compiling error

  #145 opened 7 months ago by jianshu93
  1

• Support for Fragment-able Modifications

  #115 opened 7 months ago by FriedLabJHU
  2

• Random questions regarding splitting mgfs, specifying charge states, multiple possible precursors....

  #138 opened 7 months ago by gsaxena888
  1

• allowed customised mass offset for open search?

  #136 opened 7 months ago by daichengxin
  0

• Input handling guardrails and glob expansion

  #133 opened 10 months ago by acesnik
  2

• Segmentation fault (core dumped)

  #129 opened 10 months ago by colinliuzelin
  1

• Sage TSV output notes

  #127 opened 10 months ago by douweschulte
  4

• How does the static modification work when the initial generation of fragments and peptides?

  #126 opened a year ago by Wonyeop
  3

• Search using parquet files

  #125 opened a year ago by prvst
  4

• No IMS model ran mzML input

  #117 opened a year ago by patrick-willems
  5

• Can't read mgfs with upper cases in path

  #124 opened a year ago by jens-decker-bruker
  0

• Differences between TSV and Parquet results.sage output

  #118 opened a year ago by RalfG
  2

• entrapment FASTA

  #121 opened a year ago by KlemensFroehlich
  3

• thread panicked

  #122 opened a year ago by KlemensFroehlich
  3

• Bruker Support

  #116 opened a year ago by treitpeter
  1

• Feature request: move mod input, mod runner, mod output into sage_core

  #114 opened a year ago by neonelemental
  10

• Support for mgf

  #112 opened a year ago by ypriverol
  2

• Feature request: peptide position information in results

  #110 opened a year ago by kabalak
  1

• Supporting MGF format

  #104 opened a year ago by yujinjeong2
  1

• Interfacing Sage results to protein group FDR package

  #102 opened a year ago by MatthewThe
  5

• .pin file not opening in percolator

  #107 opened a year ago by jordancurrie
  4

• Semi-enzymatic digests not completing?

  #106 opened a year ago by hbarsnes
  1

• FDR: Peptide_q-values above 1% and MS2Rescore compatible

  #105 opened a year ago by guideflandre
  5

• Is support for SILAC or reductive dimethylation quantification planned

  #89 opened a year ago by radusuciu
  2

• Python bindings for sage-core library

  #100 opened a year ago by theGreatHerrLebert
  7

• Unspecific HLA datasets

  #99 opened a year ago by karimwh
  3

• Semi-enzymatic peptide generation

  #92 opened a year ago by FriedLabJHU
  0

• Restrict enzyme in multiple AA

  #90 opened a year ago by ypriverol
  4

• Single charged precursors?

  #95 opened a year ago by patrick-willems
  2

• Making spectral library by searching GPF-DIA files with Sage and other questions

  #96 opened a year ago by k-p4
  2