lcwheeler
Postdoc at CU Boulder. I'm primarily an experimentalist, studying the genetic and biochemical mechanisms of floral trait evolution.
Colorado State UniversityFort Collins, CO
Pinned Repositories
ambigauss
Generic multi-peak fitter in Python
antho-comp-evo-materials
This repository contains the supplement files referenced in "Computational modeling of anthocyanin pathway evolution".
dissertation
Lucas C. Wheeler's PhD Dissertation
emissions-estimator
A Jupyter notebook containing functions that allow the user to estimate their annual CO2 emissions
enzo
enzo is a Python wrapper for Tellurium allowing evolution of metabolic models between defined states
orbweaver
Orbweaver is a python package for performing gene co-expression network analysis
python-for-scientists
Easiest way to install Python for scientists
pyway
Pyway is a simple Python package for simulating Conway's Game of Life
lcwheeler's Repositories
lcwheeler/antho-comp-evo-materials
This repository contains the supplement files referenced in "Computational modeling of anthocyanin pathway evolution".
lcwheeler/emissions-estimator
A Jupyter notebook containing functions that allow the user to estimate their annual CO2 emissions
lcwheeler/enzo
enzo is a Python wrapper for Tellurium allowing evolution of metabolic models between defined states
lcwheeler/Arboretum2.0
The Arboretum 2.0 is the next release of the original code of Arboretum. It makes running Arboretum easier by taking care of initial cluster assignments.
lcwheeler/orbweaver
Orbweaver is a python package for performing gene co-expression network analysis
lcwheeler/pyway
Pyway is a simple Python package for simulating Conway's Game of Life
lcwheeler/augur
Pipeline components for real-time phylodynamic analysis
lcwheeler/clust
Automatic and optimised consensus clustering of one or more heterogeneous datasets
lcwheeler/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
lcwheeler/covid19-vent-list
A list projects to make emergency ventilators in response to COVID-19, focusing on free-libre open source
lcwheeler/curriculum_vitae
My CV
lcwheeler/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
lcwheeler/economic-models
A repo of simple economic models
lcwheeler/gpmap
A Python API for managing genotype-phenotype map data
lcwheeler/herbivory-defense-simulation
A computational approach to model the evolution of herbivory defense compounds in plants.
lcwheeler/info-graphics
lcwheeler/lcwheeler.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
lcwheeler/mesa
Mesa is an agent-based modeling framework in Python
lcwheeler/ndlib
Network Diffusion Library - (for NetworkX and iGraph)
lcwheeler/old-website
Build a Jekyll blog in minutes, without touching the command line.
lcwheeler/PathParser
lcwheeler/penstemon_jonesii_analyses
Analysis of introgression, local ancestry, and phenotypes from P. eatonii x P. laevis hybrid zones
lcwheeler/penstemon_novaseq
Phylogenomic analyses in Penstemon
lcwheeler/rna-seq-kallisto-sleuth
A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
lcwheeler/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
lcwheeler/seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
lcwheeler/seqtk
Toolkit for processing sequences in FASTA/Q formats
lcwheeler/SOMPY
A Python Library for Self Organizing Map (SOM)
lcwheeler/TranscriptomeAssemblyTools
A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.
lcwheeler/were-anc-less-specific
notebooks and scripts to reproduce analyses from "Were Ancestral Proteins Less Specific" manuscript