lemonhhh's Stars
sanjitsbatra/HiDENSEC
ingra14m/Deformable-3D-Gaussians
[CVPR 2024] Official implementation of "Deformable 3D Gaussians for High-Fidelity Monocular Dynamic Scene Reconstruction"
epi2me-labs/wf-pore-c
nanoporetech/pore-c
Pore-C support
nanoporetech/Pore-C-Snakemake
WuLoli/HybSeq
zhanglabtools/scHi-CSim
scHi-CSim, a simulator for generating single-cell Hi-C data.
kenjihiranabe/The-Art-of-Linear-Algebra
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
SabrinaSun1225/ChromaPalette
Illumina/PlatinumGenomes
The Platinum Genomes Truthset
Fafa-DL/Lhy_Machine_Learning
李宏毅2021/2022/2023春季机器学习课程课件及作业
alanpwhhero/HiCancer
phasegenomics/FALCON-Phase
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
HarisIqbal88/PlotNeuralNet
Latex code for making neural networks diagrams
ma-compbio/Fast-Higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
zhongmicai/Hic_tools_collection
tanlongzhi/dip-c
Tools to analyze Dip-C (or other 3C/Hi-C) data
lh3/hickit
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
vibansal/HapCUT2
software tools for haplotype assembly from sequence data
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
3b1b/manim
Animation engine for explanatory math videos
aidenlab/Juicebox
Visualization and analysis software for Hi-C data -
BoevaLab/FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
arq5x/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
eldariont/svim
Structural Variant Identification Method using Long Reads
genetics-statistics/GEMMA
Genome-wide Efficient Mixed Model Association
nvictus/lavaburst
Chromatin domains bursting with flavor
MuiseDestiny/zotero-gpt
GPT Meet Zotero.
deeptools/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.