/Segvis

Package to calculate the histone coverage of a set of genomic regions given a ChIP - Seq experiment

Primary LanguageR

Segvis: A package for visualization of high throughout sequencing data along genomic segments

This is an R package which attemps to automatize some tasks related to the visualization of aligned read data.

Segvis provides different tools to summarize and visualize data:

  • Extract read data of specified input regions

  • Plot peaks of different conditions across the same set of regions

  • Plot central measures for a set of regions with the same width

  • Subset regions according to used defined annotations

  • Plot the heatmap of signal curves accross regions separated by annotation

Some late changes:

  • We are about to submit to bioconductor, therefore we changed the version from 2.0 oto 0.99.0

  • We added examples to all help pages, and we added a whole pacakge documentation

  • The function Segvis (the segvis object constructor) was renamed as buildSegvis