leomrtns
Senior binfie @quadram-institute-bioscience (Norwich, UK). Phylogenomics and Data Sciences.
@quadram-institute-bioscience Norwich, UK
Pinned Repositories
amburana
Alignment-free sequence clustering
bioconda-recipes
Conda recipes for the bioconda channel.
biomcmc-lib
C library with low-level functions used by other software
curupixa
Low-level C library for phylogenetics. Currently under development
genefam-dist
C library for distance calculation between gene families and species trees, with a python module for creating a "signature" of a gene family tree.
recomb-biomc2
Hiearchical Bayesian Model for Viral Phylogenetic Recombination
specimage
Python module to work with hyperspectral imaging data
tauari
Python bindings to biomc2
peroba
Phylogenetic Epidemiology with ROBust Assignment
super_distance
Supertree estimation from gene trees to species trees, using matrix representation with distances.
leomrtns's Repositories
leomrtns/genefam-dist
C library for distance calculation between gene families and species trees, with a python module for creating a "signature" of a gene family tree.
leomrtns/curupixa
Low-level C library for phylogenetics. Currently under development
leomrtns/specimage
Python module to work with hyperspectral imaging data
leomrtns/recomb-biomc2
Hiearchical Bayesian Model for Viral Phylogenetic Recombination
leomrtns/amburana
Alignment-free sequence clustering
leomrtns/bioconda-recipes
Conda recipes for the bioconda channel.
leomrtns/biomcmc-lib
C library with low-level functions used by other software
leomrtns/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
leomrtns/cumaru
Multiple sequence alignment using code from kalign3 (https://github.com/TimoLassmann/kalign) from TimoLassmann
leomrtns/tauari
Python bindings to biomc2
leomrtns/jupyterblog
fastpages blog
leomrtns/leomrtns
github profile readme
leomrtns/leomrtns.github.io
github homepage
leomrtns/minimal-pathogen-agnostic-contextual-data-specification
An international minimal metadata standard for public health and One Health genomic surveillance.
leomrtns/notebooks
jupyter notebooks rendered into html pages
leomrtns/peroba
Phylogenetic Epidemiology with ROBust Assignment
leomrtns/phylobarcode
<pilot> in-silico amplicons optimised for phylogenetic signal
leomrtns/super_distance
Supertree estimation from gene trees to species trees, using matrix representation with distances.
leomrtns/tatajuba
Identification and classification of homopolymeric tracts from reads
leomrtns/uvaia
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
leomrtns/WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment