Pinned Repositories
bmrm
R package implementing Bundle Method for Regularized Risk Minimization
cavidaga.github.io
clustree
Visualise Clusterings at Different Resolutions
contrastive
Contrastive PCA
dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
indrops
Pipeline for processing inDrops sequencing data
kallisto
Near-optimal RNA-Seq quantification
M3Drop
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
SARS_CoV_2_anosmia
leonfodoulian's Repositories
leonfodoulian/SARS_CoV_2_anosmia
leonfodoulian/bmrm
R package implementing Bundle Method for Regularized Risk Minimization
leonfodoulian/cavidaga.github.io
leonfodoulian/clustree
Visualise Clusterings at Different Resolutions
leonfodoulian/contrastive
Contrastive PCA
leonfodoulian/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
leonfodoulian/indrops
Pipeline for processing inDrops sequencing data
leonfodoulian/kallisto
Near-optimal RNA-Seq quantification
leonfodoulian/M3Drop
leonfodoulian/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
leonfodoulian/pagoda2
R package for analyzing and interactively exploring large single-cell RNA-seq datasets
leonfodoulian/paired-end_barcode_splitter
leonfodoulian/r-ladies-ML-1
:star: Files for my R-Ladies ML workshop - Supervised Learning 101 :star:
leonfodoulian/Rslalom
slalom - an R package implementing a factorial single cell latent variable model
leonfodoulian/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
leonfodoulian/scrattch.hicat
Hierarchical, iterative clustering for analysis of transcriptomics data in R
leonfodoulian/scrattch.vis
scRNA-seq data visualization from scrattch
leonfodoulian/seurat
R toolkit for single cell genomics
leonfodoulian/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
leonfodoulian/URD
URD - Reconstruction of Branching Developmental Trajectories
leonfodoulian/uwot
An R package implementing the UMAP dimensionality reduction method.
leonfodoulian/zinbwave
Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave