lguillier

lguillier's Stars

• rstudio/bookdown

  Authoring Books and Technical Documents with R Markdown

  Language:JavaScript3.8k1251.1k1.3k

• gkaramanis/tidytuesday

  Code and plots for submissions to the #tidytuesday challenge

  Language:R698532114

• ropensci/taxize

  A taxonomic toolbelt for R

  Language:R2693474061

• caitiecollins/treeWAS

  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

  Language:R95138019

• SionBayliss/PIRATE

  A toolbox for pangenome analysis and threshold evaluation.

  Language:Perl9198529

• xavierdidelot/BactDating

  Bayesian inference of ancestral dates on bacterial phylogenetic trees

  Language:R8366617

• GRousselet/rogme

  Robust Graphical Methods For Group Comparisons

  Language:R8271010

• davidcarayon/InraeThemes

  Unofficial collection of templates and themes in line with INRAE's design system

  Language:R44465

• harry-thorpe/piggy

  Pipeline for analysing intergenic regions in bacteria

  Language:Perl375287

• tpetzoldt/growthrates

  R Package growthrates

  Language:R26547

• ansariazim/treeBreaker

  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree

  Language:C25473

• padpadpadpad/bartlett_et_al_2022_human_pathogens

  Language:HTML15402

• arnaldpuy/sensobol

  sensobol: Computation of high-order Sobol' sensitivity indices

  Language:R143114

• merlebehr/treeSeg

  Implementation of the treeSeg algorithm as an R package.

  Language:Jupyter Notebook14335

• albgarre/biogrowth

  Language:R6114

• p-barbet/GENIAL

  GENes Indentification with Abricate for Lucky biologists

  Language:Python6202

• dylanhmorris/sars-cov-2-stability

  Code and data to accompany the paper "Aerosol and Surface Stability of SARS-CoV-2 as Compared with SARS-CoV-1"

  Language:R5205

• dylanhmorris/sars-cov-2-temp-humidity

  Code and data for study of SARS-CoV-2 environmental stability as a function of temperature and humidity

  Language:R50

• afelten-Anses/NAuRA

  Nice Automatic Research of Alleles

  Language:Python41

• jukran/BIKE

  Foodborne exposure assessment model for biological and chemical hazards

  Language:Jupyter Notebook2100

• ndmluong/sacada

  Language:HTML2200

• Nicolas-Radomski/PairwiseDifferencesToROC

  Script performing Receiver Operating Characteristic (ROC) analysis to identify thresholds of mutation pairwise differences from microbial genomes involved in an investigated outbreak

  Language:R2101

• afelten-Anses/QuickPhylo

  Create tree from assemblies with Mash

  Language:Python1111

• albgarre/bioinactivation_FE

  A user-friendly interface for the bioinactivation package

  Language:R1100

• dylanhmorris/mpox-stability

  Code and data to accompany the paper "Stability of Monkeypox Virus in Body Fluids and Wastewater"

  Language:Python1100