minipileup
emilydolivo97 opened this issue · 1 comments
emilydolivo97 commented
Hello, thank you for this package.
I have 2 questions and I hope you can answer them:
- Can we use minipileup on reads generated using Oxford Nanopore technology (long reads)?
- Can we use it to detect variants ?
lh3 commented
- Yes.
- For standard variant calling, deepvariant and clair3 are usually better.