lh3/minipileup

Issues

• ALT counts

  #15 opened 5 months ago by SamKalandarov
  0

• REF allele or missing

  #14 opened 5 months ago by baozg
  1

• set ploidy value

  #8 opened 6 months ago by DaliBAmor
  1

• non diploid organisms

  #12 opened 6 months ago by SamKalandarov
  1

• QUAL in vcf seems the variant count?

  #13 opened 6 months ago by baozg
  1

• `overlaps-removal` for pair end reads

  #6 opened 7 months ago by y9c
  0

• Extraction of information from VCF file

  #7 opened 6 months ago by QuentinPerriere
  2

• phasing of minipileup vcf file

  #11 opened 6 months ago by ScarlettPegany
  1

• Minipileup algorithm

  #10 opened 6 months ago by saassli21
  2

• minipileup

  #4 opened 7 months ago by emilydolivo97
  1

• bam list support

  #1 opened 8 months ago by xiekunwhy
  3

• utilities

  #9 opened 7 months ago by SueFletcher
  1

• Super cool tool! Just noticed though that -y overrides user set values for -a and -s and -q and -Q

  #2 opened 7 months ago by jelber2
  7

• Enhancement request: adding the command call to the VCF header

  #3 opened 7 months ago by jelber2
  0

• minipileup installation

  #5 opened 7 months ago by emilydolivo97
  1