Pinned Repositories
Angular_Reatful_Gin_Sqlite_template
🌐 Angular_Reatful_Gin_Sqlite_template
biodart
🔬 A dart package for bioinformatics
cfutils
🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
cpup
Convert mpileup format to base count tsv table
cutseq
✂️ Trim sequencing adapters from NGS data automatically
m6A-SACseq
🧪 Optimized protocol for m6A-SAC-seq
mpileup
extract nucleotide/read counts at user specific loci from multiple bam files
myneovim.lua
lua based nvim config
pseudoU-BIDseq
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
ssqr
Generate and Share ss Configure File by QR Code
y9c's Repositories
y9c/cfutils
🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.
y9c/pseudoU-BIDseq
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
y9c/myneovim.lua
lua based nvim config
y9c/cpup
Convert mpileup format to base count tsv table
y9c/cutseq
✂️ Trim sequencing adapters from NGS data automatically
y9c/bullet-theme.zsh
:bullettrain_side: An oh-my-zsh shell theme based on the Powerline Vim plugin
y9c/lc96parser
convert roche lc96p file into RDML file and show CT values in Excel format
y9c/m5C-UBSseq
Ultrafast bisulfite
y9c/variant
python utils for genomic variant (WIP)
y9c/blog.yech.xyz
Will start blogging someday
y9c/cutadapt
Cutadapt removes adapter sequences from sequencing reads
y9c/datacache
Helpers for transparently downloading datasets
y9c/eulerr
Area-Proportional Euler and Venn Diagrams with Ellipses
y9c/falco
A C++ implementation of FastQC for quality control of sequencing data
y9c/gtfparse
Parsing tools for GTF (gene transfer format) files
y9c/hugo-theme-diary
Moments piled up. A Hugo theme ported from SumiMakito/hexo-theme-Journal.
y9c/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
y9c/MultiQC_YC
MultiQC module by YC
y9c/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
y9c/pyvenn
2 ~ 6 sets venn diagram for python
y9c/qtltools
A complete tool set for molecular QTL discovery and analysis
y9c/ShortStack
ShortStack: Comprehensive annotation and quantification of small RNA genes
y9c/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
y9c/snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
y9c/snakemake-interface-executor-plugins
This package provides a stable interface for interactions between Snakemake and its executor plugins.
y9c/snakemake-interface-storage-plugins
This package provides a stable interface for interactions between Snakemake and its storage plugins.
y9c/ssw
Python interface for SIMD Smith-Waterman Library
y9c/varcode
Library for manipulating genomic variants and predicting their effects
y9c/y9c
y9c/y9c.github.io