liamtimms
🧲 MRI Researcher • 🩻 Physics Ph.D. • 💻 Coder @ Harvard Medical School
Boston, MA, USA
Pinned Repositories
Anima-Public
Open source software for medical image processing from the Empenn team
ANTs
Advanced Normalization Tools (ANTs)
arc-theme
A flat theme with transparent elements (actively maintained fork)
art
bashscripts
Scripts I wrote in Bash to make my life easier.
configs
My personal dotfiles.
kuramoto-neurons
code for "Synchronization in phase-coupled Kuramoto oscillator networks with axonal delay and synaptic plasticity"
prosemode.nvim
A dead simple neovim lua plugin for writing prose.
scientific-markdown
Templates + advice for using Markdown in scientific writing.
slicenii
utility for slicing a nifti file along an axis
liamtimms's Repositories
liamtimms/prosemode.nvim
A dead simple neovim lua plugin for writing prose.
liamtimms/slicenii
utility for slicing a nifti file along an axis
liamtimms/Anima-Public
Open source software for medical image processing from the Empenn team
liamtimms/art
liamtimms/aur
repository for working on AUR files
liamtimms/bashscripts
Scripts I wrote in Bash to make my life easier.
liamtimms/configs
My personal dotfiles.
liamtimms/kuramoto-neurons
code for "Synchronization in phase-coupled Kuramoto oscillator networks with axonal delay and synaptic plasticity"
liamtimms/mrarch
Scripts to set up Arch Linux for MRI and Neuroimaging.
liamtimms/scientific-markdown
Templates + advice for using Markdown in scientific writing.
liamtimms/bruker_ute_data_extraction
code for extracting Bruker from 2016-2018
liamtimms/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
liamtimms/dicom_parser
Facilitates DICOM data access.
liamtimms/dracula.nvim
Dracula colorscheme for neovim written in Lua
liamtimms/full_image_header
extracts and processes full information contain in Seimens DCM headers
liamtimms/intensity-normalization
normalize the intensities of various MR image modalities
liamtimms/ismrm-moco-workshop
liamtimms/ismrmrd-python
Python API for the ISMRMRD file format
liamtimms/itksnap
ITK-SNAP medical image segmentation tool
liamtimms/mprager
MP2RAGE to pseudo-MPRAGE with minimal dependencies
liamtimms/NiftyMIC
NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.
liamtimms/nvim-lua-temp
temporary repo for playing with an alternative lua first nvim config
liamtimms/onboarding
liamtimms/pyGRASP
liamtimms/python-ismrmrd-server
Example client/server example for the streaming ISMRM Raw Data protocol
liamtimms/python_snippets
a place to throw some python code patterns
liamtimms/segment-anything-mri
Segment Anything Model (SAM) applied to MRI
liamtimms/TF2.4_IVIM-MRI_CodeCollection
OSIPI TF2.4: IVIM MRI code collection
liamtimms/website
liamtimms/zmk-config-xiao
for dactyl