Pinned Repositories
AC-ICAM-NM
Code related to the 2023 AC-ICAM manuscript in Nature Medicine.
agilent
Microarray analysis of agilent data
AIPS
Absolute Inference of Patient Signatures
Alternative-Splicing-Tools
A list of alternative splicing analysis resources
aneuploidy_score
R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al. (https://doi.org/10.1038/s41467-020-14286-0)
annoPeak
APAsurvey
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data
CASE_splicing
RNAMod
Sierra
Discover differential transcript usage from polyA-captured single cell RNA-seq data
liangdp1984's Repositories
liangdp1984/Alternative-Splicing-Tools
A list of alternative splicing analysis resources
liangdp1984/ATACseq-1
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
liangdp1984/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
liangdp1984/Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
liangdp1984/DJExpress
liangdp1984/ecDNA_immune
Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism
liangdp1984/EISAcompR
EISACompR pipeline for performing Exon/Intron split Analysis (EISA) on RNA-Seq data
liangdp1984/eisaR
Exon-Intron Split Analysis (EISA) in R
liangdp1984/gatk4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
liangdp1984/gwas-download
Easily download publicly available GWAS summary statistics.
liangdp1984/ImmAPAScore
An integrated algorithm immune-related APA event (ImmAPA) score pipeline to characterize the regulatory landscape of APA events
liangdp1984/irGSEA
The integration of single cell rank-based gene set enrichment analysis
liangdp1984/IRLS
Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer
liangdp1984/M6A
Methylation pattern mediated by m6A regulator and tumor microenvironment invasion in lung adenocarcinoma
liangdp1984/monaLisa
binned motif enrichment analysis and visualisation
liangdp1984/netviewr
Graph decorators for data and population structure visualization :octopus:
liangdp1984/Pancan-ICI
liangdp1984/Pipeline_for_Identification_m6A_AS_and_APA_with_Long_Read
An Analysis Pipeline for Identification of RNA Modification, Alternative Splicing and Polyadenylation Using Third-Generation Sequencing
liangdp1984/REMP
Github repository for REMP
liangdp1984/scCustomize
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
liangdp1984/scFlow
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
liangdp1984/scRNAseq-bilateral-PTC
liangdp1984/scWGCNA
scWGCNA
liangdp1984/sheng-xin-xiao-bai-yu-2021
历史文档备份(2021年)
liangdp1984/singlecellglioma-verhaaklab
liangdp1984/sra-explorer
Web application to explore the Sequence Read Archive.
liangdp1984/The_Distinct_DNA_Methylome_ALL
liangdp1984/tumor-immunogenicity-score
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
liangdp1984/Workshop
课题组每周研讨会
liangdp1984/ZFP541_manuscript