liangdp1984's Stars
jcrodriguez1989/chatgpt
Interface to ChatGPT from R
genecell/single-cell-papers-with-code
Papers with code for single cell related papers
crazyhottommy/awesome_spatial_omics
tools and notes for spatial omics
gagneurlab/drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
MRCIEU/gwasglue
Linking GWAS data to analytical tools in R
cbg-ethz/NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
rnabioco/valr
Genome Interval Arithmetic in R
omnideconv/omnideconv
Unified access to several second-generation deconvolution methods
junchaoshi/sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
califano-lab/single-cell-pipeline
gagneurlab/FRASER
FRASER - Find RAre Splicing Events in RNA-seq
gjhunt/dtangle
Cell type deconvolution from high-throughput gene expression profiling experiments.
ruppinlab/CSI-Microbes-identification
Code for the identification step for CSI-Microbes
segrelabgenomics/TwoSampleMR_pipeline
Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
eleporcu/TWMR
leekgroup/phenopredict
Use gene expression to predict phenotype sample information
SamGa3/microbiome_reconstruction
elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
kisudsoe/PostGWAS-tools
These are tools for post GWAS analysis. Please see below link as a document for install and use.
sacanlab/immunotar
asmagen/SPAGEfinder
Computational approach to identify Survival associated Pairwise Gene Expression states.
PoisonAlien/annovar2maf
Tiny python script to generate MAF files from output generated by standard annotation programs
diChen310/scRNA-ST_lung
lingziqi8278/pig-omics-project
PrinceWang2018/SEAA
Splicing Efficiency Analysis and Annotation
TaliaferroLab/FeatureReachR
diChen310/PTC_multi_omics
Multi omics integration analysis of papillary thyroid cancer
leahkemp/ont_human_workflow
A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data.
raghvendra5688/INV_Analysis
PANcancer invasiveness analysis using consensus frameworks of RGBM + FGSEA, RGBM + Viper, ARACNE + FGSEA and ARACNE + Viper
sheynkman-lab/LIME