rnabioco/valr

Issues

• Release valr 0.8.2

  #419 opened 3 months ago by kriemo
  0

• [bed_intersect] consider warning user when input data is passed multiple times through %>% operator

  #412 opened 7 months ago by kriemo
  1

• Not getting desired output from bed_makewindows!

  #414 opened 7 months ago by BiodeB
  4

• Release valr 0.8.1

  #415 opened 7 months ago by kriemo
  0

• Release valr 0.8.0

  #413 opened 8 months ago by jayhesselberth
  1

• genomecov function

  #410 opened a year ago by jayhesselberth
  4

• Release valr 0.7.0

  #409 opened a year ago by jayhesselberth
  1

• multiIntersectBed like function

  #407 opened a year ago by loukesio
  4

• Release valr 0.6.8

  #405 opened 2 years ago by kriemo
  0

• bed_cluster creates different clusters when other intervals included

  #401 opened 2 years ago by kcamnairb
  6

• Release valr 0.6.7

  #398 opened 2 years ago by jayhesselberth
  1

• warning with new dplyr?

  #399 opened 2 years ago by jayhesselberth
  0

• tabix, bam, and vcf reading

  #364 opened 2 years ago by kriemo
  2

• chrom in x missing in y is dropped from bed_coverage output

  #395 opened 2 years ago by kcamnairb
  2

• Release valr 0.6.6

  #394 opened 2 years ago by jayhesselberth
  1

• update message and errors with cli

  #392 opened 2 years ago by jayhesselberth
  0

• Consider replacing IntervalTree with cgranges

  #349 opened 2 years ago by jayhesselberth
  1

• Release valr 0.6.5

  #390 opened 2 years ago by jayhesselberth
  2

• bed_cluster grouping different contigs together

  #388 opened 2 years ago by kcamnairb
  2

• bed_random Error: `length` must be greater than all chrom sizes

  #385 opened 2 years ago by millerh1
  5

• Multiple tag pairs from same tag missed in read_gtf()

  #384 opened 3 years ago by sigven
  2

• Release valr 0.6.4

  #383 opened 3 years ago by jayhesselberth
  9

• implement read_bigwig

  #379 opened 3 years ago by jayhesselberth
  2

• unexpected behavior when intersecting three tibbles

  #380 opened 3 years ago by sheridar
  2

• Drop Rcpp

  #362 opened 3 years ago by jayhesselberth
  4

• bed_closest giving too many results

  #376 opened 3 years ago by kbauerm
  3

• create_introns returns wrong numbering for + strand

  #377 opened 3 years ago by sheridar
  1

• Release valr 0.6.3

  #375 opened 4 years ago by jayhesselberth
  0

• Release valr 0.6.2

  #373 opened 4 years ago by jayhesselberth
  0

• Rewrite benchmarks using bench instead of microbenchmark

  #368 opened 4 years ago by jayhesselberth
  0

• bed_random doesn't return tibble if sorted = FALSE

  #369 opened 4 years ago by jayhesselberth
  0

• Release valr 0.6.1

  #367 opened 5 years ago by jayhesselberth
  5

• rchk issue

  #365 opened 5 years ago by jayhesselberth
  2

• Release valr 0.6.0

  #359 opened 5 years ago by jayhesselberth
  0

• fix build against dev dplyr

  #353 opened 5 years ago by kriemo
  7

• bed_intersect function convert factor columns to numeric

  #360 opened 5 years ago by frequena
  4

• use github actions

  #356 opened 5 years ago by jayhesselberth
  0

• benchmarks

  #355 opened 5 years ago by jayhesselberth
  3

• Alphanumerical Sorting by Chromosome

  #352 opened 5 years ago by canholyavkin
  2

• bed_intersect reports non-overlapping two adjacent intervals

  #351 opened 5 years ago by ItokawaK
  1

• bed12_to_exons

  #350 opened 5 years ago by CeesBM
  2

• Release valr v0.5.0

  #346 opened 6 years ago by kriemo
  4

• Release valr 0.4.2

  #340 opened 6 years ago by kriemo
  0

• Incompatible with dplyr 0.7.8 rc

  #338 opened 6 years ago by krlmlr
  6

• Release valr 0.4.1

  #337 opened 6 years ago by jayhesselberth
  0

• example to convert tbl_interval to GRanges

  #335 opened 7 years ago by jayhesselberth
  2

• fix tests warnings for CRAN submission

  #330 opened 7 years ago by jayhesselberth
  1

• bed_slop failed test "going beyond the end of the chrom"

  #323 opened 7 years ago by raysinensis
  1

• bed_shift and bed_slop failed test "going beyond the start of the chrom"

  #324 opened 7 years ago by raysinensis
  1

• bed_makewindows failed test "alway get the number of requested windows"

  #322 opened 7 years ago by raysinensis
  2