kriemo
Research Senior Instructor at the RNA Bioscience Initiative
RNA Bioscience Initiative, University of Colorado School of MedicineDenver, CO
Pinned Repositories
kentr
R package containing various tools for sequence analysis
SciRNotebook
Template for building a lab notebook using RMarkdown
bmsc-7810-pbda
BMSC 7810: Practical biological data analysis with R/RStudio
medulloblast
single cell RNA-seq survey of childhood medulloblastoma
pneuro-onc-browsers
Pediatric Neuro-oncology Cell Atlas
raer
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
scrna-subsets
Recovery of transcriptome subsets from pooled single cell RNA sequencing libraries
valr
Genome Interval Arithmetic in R
kriemo's Repositories
kriemo/SciRNotebook
Template for building a lab notebook using RMarkdown
kriemo/kentr
R package containing various tools for sequence analysis
kriemo/academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
kriemo/al-folio
A beautiful, simple, clean, and responsive Jekyll theme for academics
kriemo/bedtools2
A powerful toolset for genome arithmetic.
kriemo/bti
Bam Tag Index - Extract alignments from a bam file by tag
kriemo/cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
kriemo/clustifyR
An R Package to cluster cell types from readcounts
kriemo/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
kriemo/cutadapt
Cutadapt removes adapter sequences from sequencing reads
kriemo/deepTools
Tools to process and analyze deep sequencing data.
kriemo/dplyr
Dplyr: A grammar of data manipulation
kriemo/GenomicFeatures
Conveniently import and query gene models
kriemo/htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
kriemo/lung-regeneration-meta
kriemo/mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
kriemo/practical-data-analysis
Exploratory Data Analysis in R
kriemo/Rhtslib
HTSlib high-throughput sequencing library as an R package
kriemo/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
kriemo/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
kriemo/scrunchy
R toolkit for the analysis of single-cell functional heterogeneity
kriemo/seurat
R toolkit for single cell genomics
kriemo/tacorna.github.io
TACO Tool Website
kriemo/toolbucket
kriemo/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
kriemo/valr
Genome interval arithmetic in R
kriemo/valr-demo
Demonstrations of the valr package
kriemo/VariantAnnotation
Annotation of Genetic Variants
kriemo/velocyto.py
RNA velocity estimation in Python