kriemo
Research Senior Instructor at the RNA Bioscience Initiative
RNA Bioscience Initiative, University of Colorado School of MedicineDenver, CO
kriemo's Stars
BlakeRMills/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
matloff/fasteR
Fast Lane to Learning R!
iamericfletcher/awesome-r-learning-resources
A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).
vsbuffalo/scidataflow
Command line scientific data management tool
navinlabcode/copykat
kanaverse/kana
Single cell analysis in the browser
GoekeLab/sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
zdebruine/RcppML
Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
saghirb/Getting-Started-in-R
An 8 page guide to starting with R - Tidyverse Edition
wch/r-debug
Dockerfile with several builds of R for memory/thread debugging
Oshlack/JAFFA
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
pachterlab/voyager
From geospatial to spatial -omics
epi2me-labs/modbam2bed
zdebruine/singlet
Single-cell analysis with non-negative matrix factorization
jorainer/ensembldb
This is the ensembldb development repository.
kf-cuanschutz/CU-Anschutz-HPC-documentation
All documentation associated with bioinformatics tutorial on the Alpine cluster
goodarzilab/SwitchFinder
Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
michaelplynch/demuxSNP
R package for using SNPs to QC HTO and LMO demultiplexing calls
FelixErnst/Structstrings
:package: Structstrings: implementation of Biostrings to work with dot bracket annotations
seandavi/ITR
Learning and teaching materials for R and Bioconductor
amc-heme/scExploreR
Shiny app for single cell omics data visualization
CUAnschutzBDC/alpine_guide
A guide for using the alpine server at the University of Colorado
oligomyeggo/DevBio-scRNA-seq-Workshop
sjaganna/molb7910-2019
This repository holds all the materials for the class MOLB7910 taught in Spring 2019 by Suja Jagannathan and Neel Mukherjee
dieterich-lab/QutRNA
rnabioco/spatialshiny
Browser for Spatial Transcriptomics, built on R Shiny
MLKaufman/fastq-barcode-check
Rust code to check FASTQ reads for the presence of barcode sequences.
rnabioco/gene_model_plot
Python package designed to visualize gene models from GTF files and variants from VCF files.
rnabioco/visium-probe-design
Generate probes for the 10x Genomics fixed assay