amc-heme/scExploreR

Issues

• Error in DGE filtering interface for anndata objects

  #350 opened 15 days ago
  0

• Add scanpy dependency to README

  #348 opened 22 days ago
  0

• Test: DGE functionality

  #347 opened 22 days ago
  0

• Test that config app loads for all object types

  #345 opened 23 days ago
  0

• Config app crashes for all anndata objects

  #344 opened 22 days ago
  2

• Test: app setup vignette executes without errors

  #343 opened 23 days ago
  0

• Resolve #TODOs in full app documentation

  #342 opened 23 days ago
  0

• Add callout cards to full docs

  #340 opened 24 days ago
  0

• Create browser config file docs

  #339 opened a month ago
  0

• Create Docker Docs

  #338 opened a month ago
  0

• Split feature plots occasionally return an error when some facets have no detectable expression of a feature.

  #337 opened a month ago
  0

• Add tooltips for new DGE filtering interface

  #335 opened a month ago
  0

• Add Docker documentation

  #333 opened 2 months ago
  0

• Multi object apps fail when browser config files contain spaces in object names

  #330 opened 2 months ago
  0

• Docs: clarify requirements for loading HDF5 SingleCellExperiment objects into the config app

  #328 opened 2 months ago
  1

• Remove "choose marker groups" from DGE tab

  #326 opened a month ago
  0

• In DGE tab, change references to marker "classes" to "groups"

  #324 opened a month ago
  0

• Add functionality to facet by y axis on dot plots

  #320 opened 3 months ago
  0

• Cell proportion plots display an error until user chooses a proportion comparison

  #318 opened 3 months ago
  0

• Ridge plot title options drop down- option "none" not functioning

  #317 opened 3 months ago
  0

• Split plot labels on FeaturePlots are broken

  #313 opened 2 months ago
  1

• `scExploreR_assays`: Inconsistency between error message, documentation, and code

  #312 opened 3 months ago
  0

• Add a separate "browser-wide setting" section to the triple-dot button

  #311 opened 4 months ago
  0

• Anndata objects containing embeddings in obsm with more than one underscore in name produce an error

  #310 opened 2 months ago
  1

• Allow identical DimPlot 'Group By' and 'Split By' Selection

  #309 opened 3 months ago
  3

• Print notification text in the console, truncate very long error notifications

  #307 opened 4 months ago
  0

• Error when running differential expression

  #306 opened 2 months ago
  10

• Add Documentation for the current subsetting interface

  #303 opened 2 months ago
  3

• Violin plots don't support custom titles

  #301 opened 4 months ago
  0

• Add human readable suffix to DotPlots

  #299 opened 4 months ago
  2

• Features do not auto-populate in Subset Options for DE/Marker Selection

  #292 opened 3 months ago
  0

• Inconsistent behavior on "Save Config File" when config_path=NULL

  #290 opened 5 months ago
  0

• Convert UI to bslib

  #289 opened 5 months ago
  0

• Sort plots by feature expression

  #288 opened 5 months ago
  1

• Units on expression plot axes aren't clear

  #287 opened 6 months ago
  0

• Sort metadata by factor levels (if present) in all menus

  #286 opened 6 months ago
  0

• Choose plot size in inches and resolution instead of pixels

  #282 opened 6 months ago
  0

• Subset interface with categorical metadata: do not autofill variable

  #281 opened 6 months ago
  0

• Error when making blended feature plot

  #280 opened 5 months ago
  2

• Add ADT thresholds chosen upon browser set-up

  #279 opened 6 months ago
  0

• Cell type proportion plot initializes in an error state

  #278 opened 6 months ago
  0

• Documentation for Object Guidelines

  #277 opened 6 months ago
  2

• Review documentation prior to release

  #276 opened 6 months ago
  3

• Improved control of color palettes

  #275 opened 6 months ago
  0

• Document feature differences between object formats

  #274 opened 6 months ago
  1

• Document or improve interface for filtering DGE table results

  #273 opened a month ago
  7

• Tab for subset information

  #272 opened 6 months ago
  0

• Cell type proportion data in tabular format

  #271 opened 6 months ago
  0

• Sort proportion plots by increasing/decreasing values by a group

  #270 opened 6 months ago
  0

• Add labels to proportion plot

  #269 opened 6 months ago
  0