RNA Bioscience Initiative (RBI)

The RNA Bioscience Initiative Informatics Fellows program

University of Colorado School of Medicine

Pinned Repositories

clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Language:R112 11 15014
clustifyrdata
Reference data for cell-type assignment with clustifyr
Language:R13 4 141
djvdj
An R package to analyze single-cell V(D)J data
Language:R24 4 694
ggtrace
ggplot2 geoms to outline groups of data points
Language:R15 4 312
nihexporter
An R data package for NIH EXPORTER data
Language:R12 3 1913
practical-data-analysis
Short course using RStudio for biological data analysis
Language:R13 6 159
raer
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
Language:R7 5 472
rhumba
Snakemake pipelines for RNA sequencing data
Language:C2 6 72
scraps
Single-cell RNA Processing Software
Language:Python11 5 664
valr
Genome Interval Arithmetic in R
Language:R88 8 25125

RNA Bioscience Initiative (RBI)'s Repositories

rnabioco/clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Language:R112 11 15014
rnabioco/valr
Genome Interval Arithmetic in R
Language:R88 8 25125
rnabioco/djvdj
An R package to analyze single-cell V(D)J data
Language:R24 4 694
rnabioco/ggtrace
ggplot2 geoms to outline groups of data points
Language:R15 4 312
rnabioco/nihexporter
An R data package for NIH EXPORTER data
Language:R12 3 1913
rnabioco/scraps
Single-cell RNA Processing Software
Language:Python11 5 664
rnabioco/clustifyrdatahub
External single-cell mRNA sequencing data sets for use with clustifyr
Language:R8 4 31
rnabioco/raer
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
Language:R7 5 472
rnabioco/scbp
utility boilerplate single cell functions
Language:R7 4 31
rnabioco/molb-7950
MOLB 7950: Informatics and Statistics for Molecular Biology
Language:HTML3 3 110
rnabioco/rhumba
Snakemake pipelines for RNA sequencing data
Language:C2 6 72
rnabioco/spatialshiny
Browser for Spatial Transcriptomics, built on R Shiny
Language:R2 3 01
rnabioco/tRNA004
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
Language:Python2 2 121
rnabioco/bmsc-7810-pbda
BMSC 7810: Practical biological data analysis with R/RStudio
Language:HTML1 3 61
rnabioco/deepsort-rs
sort demultiplexed reads based on deeplexicon outputs
Language:Rust1
rnabioco/detectrms-rs
Fast detection of rna modifications sites
Language:Rust1 4 2
rnabioco/fuzzyfastq-rs
Rust implementation of fuzzy matching of sequences in FASTQ files
Language:Rust1 3 0
rnabioco/gene_model_plot
Python package designed to visualize gene models from GTF files and variants from VCF files.
Language:Jupyter Notebook1
rnabioco/pneuro-onc-browsers
Pediatric Neuro-oncology Cell Atlas
Language:TeX0 2 10
rnabioco/2a-peptide-search
HMM models of the 2A peptide and DB search results
Language:Shell1 7
rnabioco/ameloblast-scrnaseq
scRNA-seq analysis of ameloblasts
Language:R3 0
rnabioco/cellranger
10x Genomics Single Cell Analysis
Language:Rust0 0
rnabioco/lnsc-cell-browser
LNSC cell browser
Language:R1 4
rnabioco/molb-7950-data
Data repository for MOLB 7950
3 0
rnabioco/morrison-lnsc
Integrated analysis of CHIKV LNSC datasets
Language:R1 1
rnabioco/raerdata
collection of datasets to illustrate functionality in the raer pacakge
Language:R1 5
rnabioco/rbitemplate
RBI pkgdown template
Language:R3 2
rnabioco/reis-rbi-pilot-fat-body
Language:Shell2 0
rnabioco/remora
Methylation/modified base calling separated from basecalling.
Language:Python
rnabioco/tRNAseq-logistics
Nanopore tRNA sequencing logistics (Old chemistry)
Language:CSS